Factsheet for Bra011290.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 6
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75188	Canola	vacuole	97.22	97.38
AT4G31670.1	Thale cress	endoplasmic reticulum, golgi	80.39	77.97
Bra007837.1-P	Field mustard	nucleus	53.1	63.73
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	65.52	63.55
GSMUA_Achr7P05090_001	Banana	vacuole	43.79	57.39
PGSC0003DMT400076065	Potato	endoplasmic reticulum	31.54	55.46
KRH61621	Soybean	golgi	52.78	43.53
KRH15706	Soybean	golgi, plasma membrane, vacuole	51.8	43.48
KRH52289	Soybean	golgi	51.96	43.32
KRH05330	Soybean	golgi, plasma membrane	50.82	42.2
Solyc12g096430.1.1	Tomato	nucleus, plastid	41.18	40.51
Solyc08g069050.2.1	Tomato	extracellular	48.53	38.22
VIT_04s0069g00760.t01	Wine grape	nucleus	48.69	34.49
Zm00001d036707_P006	Maize	plasma membrane	45.75	29.23
KXG20513	Sorghum	golgi, plasma membrane	45.75	28.69
Os06t0654000-01	Rice	cytosol, nucleus	43.3	28.07
Bra024386.1-P	Field mustard	golgi	34.8	27.77
Bra038533.1-P	Field mustard	nucleus	16.01	27.61
Bra010647.1-P	Field mustard	nucleus	15.85	26.08
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	44.44	25.66
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	44.61	25.63
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	44.77	25.49
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	46.9	25.38
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	36.27	25.31
HORVU7Hr1G111430.5	Barley	cytosol, nucleus	43.46	25.31
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	36.11	24.78
Bra024037.1-P	Field mustard	cytosol	15.36	23.5
Bra011823.1-P	Field mustard	nucleus	15.52	21.54
Bra019219.1-P	Field mustard	golgi	35.62	21.54
Bra013814.1-P	Field mustard	golgi	35.78	21.47
Bra028566.1-P	Field mustard	cytosol	16.5	20.04
Bra021031.1-P	Field mustard	nucleus	19.93	19.0
Bra022060.1-P	Field mustard	nucleus	20.1	18.5
Bra027341.1-P	Field mustard	mitochondrion	20.59	18.34
Bra025000.1-P	Field mustard	endoplasmic reticulum	21.08	17.7
Bra010268.1-P	Field mustard	cytosol	16.01	17.22
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	15.85	16.44
Bra006790.1-P	Field mustard	nucleus, plastid	21.57	15.88
Bra020400.1-P	Field mustard	nucleus	20.91	15.37
Bra002683.1-P	Field mustard	nucleus	22.39	13.95

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra011290	EnsemblPlants:Bra011290.1	EnsemblPlants:Bra011290.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893
InterPro:IPR028889	UniProt:M4D486	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	PFscan:PS50235
PFscan:PS50865	PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001
TMHMM:TMhelix	UniParc:UPI0002546807	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg

Description

AT4G31670 (E=4e-263) UBP18 | UBP18 (UBIQUITIN-SPECIFIC PROTEASE 18); cysteine-type endopeptidase/ ubiquitin thiolesterase

Coordinates

chrA01:+:2900807..2903431

Molecular Weight (calculated)

68737.7 Da

IEP (calculated)

4.742

GRAVY (calculated)

-0.346

Length

612 amino acids

Sequence
(BLAST)

001: MHEVGFPLDL SVLTRLIPSL FFLAVGVFYF LRNTAAKYFD IGAAAAGGFD RELVAEDCTT KCSRCNSVRY CSEECQTSDW SSGHQRRCRE IGITTLTPSA
101: RNSLRFRASR FGDCPERDQN KINFKPREVL FPYEEFVRYF NWDNTDLAPC GLMNCGNSCF ANVILQCLSW TRPLVAYLLE RGHRSECMRD DWCFFCAFQT
201: HVERASQSRY PFSPVNIISR LTNIGGTLGY GRQEDAHEFM RYAIDTMQSV CLDEFGGEKM VPPRCQETTL VQYIFGGVLQ SQVQCTVCNN VSEQYENMMD
301: LTVEIHGDAV SLEECLDQFT AREWLQGDNM YKCDRCSDYV KACKRLTIRR PPNVLTIALK RFKGGRYGKL NKRISFPETL DLRPYMSQGG EGSDVYTLYA
401: VIVHLDMLNA SFFGHYICYI KDFSGNWYRI DDSEIESVEL EDVLSQRAYM LLYSRIQARS PLPCATLGSQ VQEEKETDTL ATKPCQKELV ESSMVEAIDT
501: SSCSSHAASE DLECEQESSS SLSSSISSPS SPSVVTSESC TVDGLDSDSN PWIDDDSAID HQESVVTNGN IDGEVKNHAV GSCSDVTASV PSSCSKPRHP
601: VRDTDTKMIG AQ

Best Arabidopsis Sequence Match ( AT4G31670.1 )
(BLAST)

001: MHEVGFPLDL SVFTRLIATL FFLAVGVFYF LKNTAAKYFD IGAAAAGGFD RDFMAVDAED CSVCGNFSTK KCSRCKSVRY CSAECQRSDW SSGHQRNCRD
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q

Arabidopsis Description

UBP18Ubiquitin carboxyl-terminal hydrolase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q67XW5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.