Factsheet for Bra007837.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34761	Canola	endoplasmic reticulum, vacuole	99.8	79.04
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	96.08	75.27
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	81.96	66.24
AT2G24640.1	Thale cress	endoplasmic reticulum, vacuole	81.96	62.2
Bra011290.1-P	Field mustard	vacuole	63.73	53.1
GSMUA_Achr7P05090_001	Banana	vacuole	42.35	46.25
PGSC0003DMT400076065	Potato	endoplasmic reticulum	29.22	42.82
KRH15706	Soybean	golgi, plasma membrane, vacuole	53.14	37.17
KRH05330	Soybean	golgi, plasma membrane	52.55	36.36
Solyc12g096430.1.1	Tomato	nucleus, plastid	44.12	36.17
KRH61621	Soybean	golgi	52.55	36.12
KRH52289	Soybean	golgi	51.37	35.69
Solyc08g069050.2.1	Tomato	extracellular	51.76	33.98
VIT_04s0069g00760.t01	Wine grape	nucleus	51.76	30.56
Zm00001d036707_P006	Maize	plasma membrane	47.45	25.26
KXG20513	Sorghum	golgi, plasma membrane	47.65	24.9
Os06t0654000-01	Rice	cytosol, nucleus	45.69	24.68
Bra024386.1-P	Field mustard	golgi	35.88	23.86
HORVU7Hr1G111430.5	Barley	cytosol, nucleus	45.88	22.26
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	46.47	22.05
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	45.69	21.98
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	45.88	21.97
Bra038533.1-P	Field mustard	nucleus	15.1	21.69
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	36.08	20.98
Bra010647.1-P	Field mustard	nucleus	15.1	20.7
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	36.08	20.63
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	45.69	20.6
Bra024037.1-P	Field mustard	cytosol	15.49	19.75
Bra019219.1-P	Field mustard	golgi	34.9	17.59
Bra013814.1-P	Field mustard	golgi	34.12	17.06
Bra011823.1-P	Field mustard	nucleus	14.71	17.01
Bra028566.1-P	Field mustard	cytosol	16.47	16.67
Bra027341.1-P	Field mustard	mitochondrion	22.35	16.59
Bra010268.1-P	Field mustard	cytosol	16.67	14.94
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	16.47	14.24
Bra021031.1-P	Field mustard	nucleus	17.65	14.02
Bra022060.1-P	Field mustard	nucleus	18.04	13.83
Bra006790.1-P	Field mustard	nucleus, plastid	22.35	13.72
Bra020400.1-P	Field mustard	nucleus	21.37	13.09
Bra025000.1-P	Field mustard	endoplasmic reticulum	18.24	12.76
Bra002683.1-P	Field mustard	nucleus	23.33	12.12

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra007837	EnsemblPlants:Bra007837.1	EnsemblPlants:Bra007837.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	UniProt:M4CUE2	PFAM:PF00443	PFAM:PF01753
ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF144232	SUPFAM:SSF54001	UniParc:UPI0002542D6A	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg

Description

AT2G24640 (E=1e-192) UBP19 | UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19); cysteine-type endopeptidase/ ubiquitin thiolesterase

Coordinates

chrA09:+:31182740..31185511

Molecular Weight (calculated)

56366.3 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.565

Length

510 amino acids

Sequence
(BLAST)

001: MVPDAAAECS VCGKLSTKKC SRCKSVRYCS AECQKSDWNS GHNRQCKVFK SSDSSPVRKD DLGFKASLFG SRRNDWCFFC EFETHLERAN MSRFPFSPMN
101: IISRLPNIGG NLGYGRQEDA HELMRFVIDM MQSVCLDEFG GEKAVPPRAQ ETTLIQHIFG GLLQSQVKCT VCSNVSDQYE NMMDLTVEIH GDAVSLEECL
201: DQFTAKEWLQ GDNLYKCDRC NDYVKACKRL SIRSAPNILT IALKRFQGGR FGKLNKRIGF PETFDLSPYT SGGGEGSDVY NLYAVIVHLD MLNASFFGHY
301: ICYVKDLRGD WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QTRPSSLRPE EVQDEKKTDT LNTESSQDGS VESSGVGPNV SSLCNGISIS HSEGSSSSSL
401: SSSVSVSEKE GEVAERVDTV DSESNPSVDM EHDSGTDHQE VVNGKEHPTV EDPAVDSSDN TASSPSAATE NPTVEDPACS DITTSSPSAA IESKHKEKED
501: SDTKMIDDAQ

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.