Factsheet for VIT_04s0069g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076065	Potato	endoplasmic reticulum	25.12	62.36
GSMUA_Achr7P05090_001	Banana	vacuole	32.87	60.81
Bra007837.1-P	Field mustard	nucleus	30.56	51.76
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	36.81	50.4
KRH15706	Soybean	golgi, plasma membrane, vacuole	42.25	50.07
KRH05330	Soybean	golgi, plasma membrane	42.71	50.07
CDY45587	Canola	endoplasmic reticulum, vacuole	36.57	49.92
CDX68773	Canola	nucleus, plasma membrane	35.19	49.51
CDY20330	Canola	vacuole	36.81	49.46
AT4G31670.1	Thale cress	endoplasmic reticulum, golgi	36.11	49.45
KRH52289	Soybean	golgi	41.44	48.77
Bra011290.1-P	Field mustard	vacuole	34.49	48.69
CDY34761	Canola	endoplasmic reticulum, vacuole	36.11	48.45
CDX75188	Canola	vacuole	34.26	48.45
KRH61621	Soybean	golgi	41.55	48.38
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	36.23	48.08
AT2G24640.1	Thale cress	endoplasmic reticulum, vacuole	36.34	46.73
Solyc08g069050.2.1	Tomato	extracellular	41.78	46.46
Solyc12g096430.1.1	Tomato	nucleus, plastid	32.52	45.18
Zm00001d036707_P006	Maize	plasma membrane	36.0	32.46
Os06t0654000-01	Rice	cytosol, nucleus	35.42	32.42
KXG20513	Sorghum	golgi, plasma membrane	36.57	32.38
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	39.93	30.5
HORVU7Hr1G111430.5	Barley	cytosol, nucleus	37.04	30.45
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	36.46	29.72
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	36.34	29.48
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	36.57	29.4
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	24.77	28.92
VIT_07s0141g00230.t01	Wine grape	nucleus	11.34	26.56
VIT_00s0199g00030.t01	Wine grape	vacuole	27.43	26.25
VIT_19s0140g00200.t01	Wine grape	plasma membrane	26.85	23.27
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	9.49	22.91
VIT_11s0118g00280.t01	Wine grape	mitochondrion	7.29	22.26
VIT_19s0093g00560.t01	Wine grape	mitochondrion	14.93	20.32
VIT_04s0008g06860.t01	Wine grape	nucleus	12.85	20.07
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	27.89	19.67
VIT_02s0012g01340.t01	Wine grape	nucleus	11.92	19.62
VIT_13s0019g01690.t01	Wine grape	cytosol	11.81	18.44
VIT_19s0014g00210.t01	Wine grape	nucleus	17.94	17.34
VIT_00s0174g00260.t01	Wine grape	nucleus	18.17	15.75
VIT_11s0118g00290.t01	Wine grape	nucleus	6.37	15.62

Protein Annotations

EntrezGene:100246913	wikigene:100246913	MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	ProteinID:CCB48868
ProteinID:CCB48868.1	UniProt:F6H9H5	EMBL:FN595500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	EntrezGene:LOC100246913	wikigene:LOC100246913
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	UniParc:UPI0002107EDB
InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_04s0069g00760	EnsemblPlantsGene:VIT_04s0069g00760	EnsemblPlants:VIT_04s0069g00760.t01	unigene:Vvi.16381
RefSeq:XP_002271840	RefSeq:XP_002271840.2	InterPro:Znf_MYND	:	:	:

Description

No Description!

Coordinates

chr4:+:8831456..8850204

Molecular Weight (calculated)

94415.8 Da

IEP (calculated)

6.213

GRAVY (calculated)

-0.465

Length

864 amino acids

Sequence
(BLAST)

001: MPGVSGTGDS CLVCGNLGTK KCSGCKAVRY CSQTCQATHW KSGHKTKCKD FQLSGKANLA DSTTHSGRKA SGVGVNNSNG IALVPSSGTS KILKQSKEIL
101: FPYDEFVEFF NWDKPGFPPC GLINCGNSCF ANVVLQCLAY TRPLVAYLLE KGHRRQCRRN DWCFLCEFQV HVERASHSPQ PFSPINILSR LPSIGGNLGY
201: GKQEDAHEFM RFAIDTMQSV CLDEFGGEKS VHPSSQETTL IQHIFGGHLQ SQVICTKCSK ISNQYENMMD LTVEIHGDAA SLEECLDQFT VTEWLHGENM
301: YKCDGCNDYV KASKRLTVRH APNILTIALK RFQSGRFGKL NKRVTFPETL DLSPYMSKAV VGTDVYKLYA VVVHLDMLNA SFFGHYVCYT KDFGGNWYRI
401: DDCKVTRVEL DDVLSQGAYM LLYSRVCVRS SCLKTTEPFK KENEQMVEVA QEVEPCSKQP VECFTKAEKS NHVESSRFLP SESNACSKVS NCEELSFRTN
501: YEIVRKDSED VDMINPELCS PVSRDNEVVD NGHSNPEEIA VLVDHTPRMV SGFASTSEIS STEVHYPKCK SVSSSDVEEG GRAKSTCVDE VMSLASSTEN
601: SVPTQNGACG RAETSHEVSA APRSTVKGTL DETKPVSSEG LAISFVDNLE RNKWGKDVPS SSCCTDHGGG KLTGQNSSSD TKLKPLFSPG FLGKRPRNKS
701: TKRDGKASEE CHEVATAGKV SSNCNGIAKP GFPHQRSGEL NNEAQALSNY NNLPSSSFVG EQPQKSLNED EMVSIEFSES VIPCEEDGNF VTANESSNNI
801: TMGGAEESKG RNKDCSINSG SICSLDNALA EKLLAIDGEV HEGGAITHSG VMGTKSKDLA ERGL

Best Arabidopsis Sequence Match ( AT4G31670.1 )
(BLAST)

001: MHEVGFPLDL SVFTRLIATL FFLAVGVFYF LKNTAAKYFD IGAAAAGGFD RDFMAVDAED CSVCGNFSTK KCSRCKSVRY CSAECQRSDW SSGHQRNCRD
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q

Arabidopsis Description

UBP18Ubiquitin carboxyl-terminal hydrolase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q67XW5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.