Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75188 | Canola | vacuole | 94.14 | 94.6 |
| AT4G31670.1 | Thale cress | endoplasmic reticulum, golgi | 80.46 | 78.29 |
| CDY45587 | Canola | endoplasmic reticulum, vacuole | 66.78 | 64.77 |
| CDY20330 | Canola | vacuole | 67.59 | 64.54 |
| CDY34761 | Canola | endoplasmic reticulum, vacuole | 67.1 | 63.98 |
| CDX76801 | Canola | endoplasmic reticulum, golgi, vacuole | 66.78 | 62.98 |
| GSMUA_Achr7P05090_001 | Banana | vacuole | 43.49 | 57.17 |
| PGSC0003DMT400076065 | Potato | endoplasmic reticulum | 31.27 | 55.17 |
| KRH61621 | Soybean | golgi | 52.93 | 43.8 |
| KRH15706 | Soybean | golgi, plasma membrane, vacuole | 51.47 | 43.35 |
| KRH52289 | Soybean | golgi | 51.79 | 43.32 |
| KRH05330 | Soybean | golgi, plasma membrane | 50.81 | 42.33 |
| Solyc12g096430.1.1 | Tomato | nucleus, plastid | 40.88 | 40.35 |
| Solyc08g069050.2.1 | Tomato | extracellular | 48.53 | 38.35 |
| VIT_04s0069g00760.t01 | Wine grape | nucleus | 49.51 | 35.19 |
| Zm00001d036707_P006 | Maize | plasma membrane | 44.79 | 28.71 |
| KXG20513 | Sorghum | golgi, plasma membrane | 44.79 | 28.18 |
| CDY08792 | Canola | vacuole | 33.71 | 27.64 |
| Os06t0654000-01 | Rice | cytosol, nucleus | 42.35 | 27.54 |
| CDY14564 | Canola | golgi | 33.88 | 27.3 |
| CDY13770 | Canola | nucleus | 15.64 | 26.97 |
| CDX76934 | Canola | nucleus | 15.47 | 26.84 |
| CDY68864 | Canola | nucleus | 15.64 | 25.81 |
| CDX69375 | Canola | nucleus | 15.47 | 25.61 |
| GSMUA_Achr1P10260_001 | Banana | endoplasmic reticulum, plasma membrane | 46.74 | 25.38 |
| TraesCS7D01G485600.1 | Wheat | golgi, plasma membrane | 43.97 | 25.35 |
| TraesCS7A01G498400.1 | Wheat | extracellular, golgi, plasma membrane | 43.65 | 25.28 |
| CDX96790 | Canola | nucleus | 34.36 | 25.27 |
| TraesCS7B01G405400.1 | Wheat | golgi, plasma membrane | 44.14 | 25.21 |
| CDX72275 | Canola | cytosol | 15.15 | 25.14 |
| CDX83925 | Canola | nucleus | 34.53 | 25.03 |
| HORVU7Hr1G111430.5 | Barley | cytosol, nucleus | 42.83 | 25.02 |
| CDY65125 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 35.67 | 24.97 |
| CDY48465 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 35.34 | 24.77 |
| CDY63898 | Canola | nucleus | 15.47 | 23.87 |
| CDY11021 | Canola | golgi | 35.67 | 21.7 |
| CDY03441 | Canola | golgi | 35.5 | 21.52 |
| CDX92643 | Canola | golgi | 35.34 | 21.42 |
| CDY34291 | Canola | golgi | 35.34 | 21.27 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 15.8 | 19.92 |
| CDX87681 | Canola | nucleus | 19.38 | 18.89 |
| CDX76553 | Canola | cytosol | 19.71 | 18.85 |
| CDX75770 | Canola | mitochondrion, nucleus | 20.03 | 18.52 |
| CDY37145 | Canola | cytosol | 19.54 | 18.02 |
| CDY23262 | Canola | nucleus | 15.96 | 17.92 |
| CDX98449 | Canola | mitochondrion | 20.52 | 17.9 |
| CDX97571 | Canola | mitochondrion | 20.52 | 17.8 |
| CDY58499 | Canola | endoplasmic reticulum | 20.85 | 17.75 |
| CDX85744 | Canola | cytosol | 16.78 | 17.7 |
| CDX77686 | Canola | endoplasmic reticulum | 21.34 | 17.35 |
| CDY50263 | Canola | cytosol | 7.65 | 17.34 |
| CDY40119 | Canola | nucleus | 16.45 | 17.29 |
| CDY36465 | Canola | cytosol | 15.8 | 16.52 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 15.8 | 16.44 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 15.96 | 16.42 |
| CDY11838 | Canola | nucleus, plastid | 21.34 | 16.0 |
| CDX88651 | Canola | nucleus, plastid | 21.17 | 15.78 |
| CDY32735 | Canola | nucleus | 20.52 | 15.73 |
| CDY02782 | Canola | nucleus | 20.52 | 15.73 |
| CDY55010 | Canola | nucleus | 21.5 | 15.53 |
| CDY57464 | Canola | nucleus | 21.17 | 15.33 |
| CDX87682 | Canola | cytosol | 0.16 | 3.03 |
Protein Annotations
| MapMan:19.2.3.1.1.7 | Gene3D:3.30.60.180 | Gene3D:3.90.70.10 | GO:A0A078C0V1 | EnsemblPlants:CDX68773 | ProteinID:CDX68773 |
| ProteinID:CDX68773.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | EnsemblPlantsGene:GSBRNA2T00130480001 | InterPro:IPR002893 | InterPro:IPR028889 | PFAM:PF00443 | PFAM:PF01753 |
| ScanProsite:PS00972 | PFscan:PS50235 | PFscan:PS50865 | PANTHER:PTHR45499 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH |
| SUPFAM:SSF144232 | SUPFAM:SSF54001 | TMHMM:TMhelix | UniParc:UPI0004EE32DD | InterPro:USP_CS | InterPro:USP_dom |
| InterPro:Znf_MYND | SEG:seg | : | : | : | : |
Description
BnaC01g06800D
Coordinates
chrLK031789:-:1200081..1202842
Molecular Weight (calculated)
68897.0 Da
IEP (calculated)
4.878
GRAVY (calculated)
-0.364
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MHEVGSPLDL SVFTRLIPTL FFLAVGVYYF LKNTAAKYFD IGGAAAGGFD RELVAVGAED CTTKCSRCNS VRYCSEECQT SDWSSGHQRR CREIGITTLT
101: PSARNGLRFR AARFGDCPER DQNKIRFKPR EVLFPYEEFV RYFNWDNTVL APCGLMNCGN SCFANVILQC LSWTRPLVAY LLERGHRSEC MRDDWCFFCA
201: FQTHVERASQ SRYPFSPVNI ISRLTNIGGT LGYGRQEDAH EFMRYAIDTM QSVCLDEFGG EKMVPPRSQE TTLVQYIFGG LLQSQVQCTV CNNVSEQYEN
301: MMDLTVEIHG DAVSLEECLD QFTVKEWLQG DNMYKCDRCN DYVKACKRLT IRRPPNVLTI ALKRFKGGRY GKLNKRISFP ETLDLRPYMS QGGEGSDVYK
401: LYAVIVHLDM LNASFFGHYI CYIKDFSGNW YRVDDSEIES VELEDVLSQR AYMLLYSRIQ TRSSLPCASL GSEVQEEKET DTLATKPCQK ELVESSMVEA
501: IYTSSSSSHA ASEELECEQE SSSSSSSSIS SPSSPSEVIE SCTVDGLDSD SNPWIEDDSA TDHQEAVVTN GNIDGEVKKH AVGSCSDVTA SVPSSCSKPR
601: HPVRDADTKM IGAQ
101: PSARNGLRFR AARFGDCPER DQNKIRFKPR EVLFPYEEFV RYFNWDNTVL APCGLMNCGN SCFANVILQC LSWTRPLVAY LLERGHRSEC MRDDWCFFCA
201: FQTHVERASQ SRYPFSPVNI ISRLTNIGGT LGYGRQEDAH EFMRYAIDTM QSVCLDEFGG EKMVPPRSQE TTLVQYIFGG LLQSQVQCTV CNNVSEQYEN
301: MMDLTVEIHG DAVSLEECLD QFTVKEWLQG DNMYKCDRCN DYVKACKRLT IRRPPNVLTI ALKRFKGGRY GKLNKRISFP ETLDLRPYMS QGGEGSDVYK
401: LYAVIVHLDM LNASFFGHYI CYIKDFSGNW YRVDDSEIES VELEDVLSQR AYMLLYSRIQ TRSSLPCASL GSEVQEEKET DTLATKPCQK ELVESSMVEA
501: IYTSSSSSHA ASEELECEQE SSSSSSSSIS SPSSPSEVIE SCTVDGLDSD SNPWIEDDSA TDHQEAVVTN GNIDGEVKKH AVGSCSDVTA SVPSSCSKPR
601: HPVRDADTKM IGAQ
001: MHEVGFPLDL SVFTRLIATL FFLAVGVFYF LKNTAAKYFD IGAAAAGGFD RDFMAVDAED CSVCGNFSTK KCSRCKSVRY CSAECQRSDW SSGHQRNCRD
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q
101: YGITTLTPSA KNGLRFRASP FGDSSASSIA LISERGQNKS SLKPREVLFP YEEFVEYFNW DNPELAPCGL MNCGNSCFAN VILQCLSWTR PLVAYLLEKG
201: HKRECMRNDW CFLCEFQTHV ERASQSRFPF SPMNIISRLT NIGGTLGYGR QEDAHEFMRY AIDMMQSVCL DEFGGEKIVP PRSQETTLIQ YIFGGLLQSQ
301: VQCTVCNHVS DQYENMMDLI VEMHGDAGSL EECLDQFTAE EWLHGDNMYK CDRCSDYVKA CKRLTIRRAP NILTIALKRY QGGRYGKLNK RISFPETLDL
401: NPYMSEGGDG SDVYKLYAVI VHLDMLNASF FGHYICYIKD FCGNWYRIDD SEIESVELED VLSQRAYMLL YSRIQARSSS SCLRSEVKDE KKTDTLDTES
501: CVKELVESSM VGAIESRSST HATIEDPVCE QSPSPSPSPS PSPSPSPSPS VLASECCSEV ERIDTLDSES NSSIDDSATD HQEDVANGNK DPEVKYQAAD
601: SWSDPTTSTP LVCTKSKPPV RDMDTKMIDA Q
Arabidopsis Description
UBP18Ubiquitin carboxyl-terminal hydrolase 18 [Source:UniProtKB/Swiss-Prot;Acc:Q67XW5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.