Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11021 | Canola | golgi | 94.27 | 94.65 |
| CDY03441 | Canola | golgi | 80.55 | 80.55 |
| CDY34291 | Canola | golgi | 81.05 | 80.49 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 76.9 | 77.28 |
| KRH72452 | Soybean | golgi, plasma membrane | 42.55 | 41.6 |
| KRH16837 | Soybean | golgi | 42.25 | 40.96 |
| GSMUA_Achr7P19020_001 | Banana | endoplasmic reticulum, golgi | 15.4 | 40.41 |
| KRH52893 | Soybean | extracellular, golgi, vacuole | 35.34 | 40.32 |
| GSMUA_Achr10P... | Banana | golgi | 17.87 | 40.22 |
| CDY08792 | Canola | vacuole | 29.22 | 39.52 |
| KRH62182 | Soybean | golgi, vacuole | 44.32 | 39.46 |
| VIT_18s0001g07370.t01 | Wine grape | golgi, vacuole | 47.68 | 39.43 |
| CDY14564 | Canola | golgi | 29.22 | 38.85 |
| GSMUA_Achr5P22990_001 | Banana | vacuole | 33.96 | 38.26 |
| GSMUA_Achr10P... | Banana | nucleus | 14.31 | 35.71 |
| CDX68773 | Canola | nucleus, plasma membrane | 21.42 | 35.34 |
| CDX75188 | Canola | vacuole | 21.22 | 35.19 |
| HORVU5Hr1G069620.20 | Barley | cytosol, nucleus | 25.27 | 34.74 |
| CDY34761 | Canola | endoplasmic reticulum, vacuole | 22.01 | 34.63 |
| GSMUA_Achr7P19010_001 | Banana | nucleus | 15.7 | 34.57 |
| Zm00001d050489_P001 | Maize | nucleus | 15.5 | 34.35 |
| CDY45587 | Canola | endoplasmic reticulum, vacuole | 21.42 | 34.28 |
| CDX76801 | Canola | endoplasmic reticulum, golgi, vacuole | 21.82 | 33.95 |
| CDY20330 | Canola | vacuole | 21.52 | 33.9 |
| GSMUA_AchrUn_... | Banana | golgi, vacuole | 32.97 | 32.97 |
| Os08t0478500-01 | Rice | plastid | 31.49 | 32.62 |
| TraesCS5D01G252600.2 | Wheat | endoplasmic reticulum, vacuole | 28.23 | 31.6 |
| OQU80649 | Sorghum | nucleus | 24.98 | 31.39 |
| TraesCS5B01G243400.1 | Wheat | vacuole | 28.23 | 31.22 |
| TraesCS7A01G282200.4 | Wheat | plastid | 30.11 | 30.84 |
| TraesCS7B01G179000.2 | Wheat | plastid | 30.11 | 30.71 |
| Os09t0464400-00 | Rice | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.13 | 30.71 |
| TraesCS7D01G280800.4 | Wheat | plastid | 29.81 | 30.44 |
| TraesCS5A01G246000.3 | Wheat | vacuole | 28.04 | 29.52 |
| Zm00001d020769_P005 | Maize | nucleus | 24.78 | 29.32 |
| CDY48465 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 25.07 | 29.0 |
| CDX96790 | Canola | nucleus | 23.89 | 28.98 |
| CDY65125 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 25.07 | 28.96 |
| OQU89635 | Sorghum | vacuole | 26.06 | 28.95 |
| CDX83925 | Canola | nucleus | 23.89 | 28.57 |
| HORVU7Hr1G064340.3 | Barley | endoplasmic reticulum | 26.85 | 27.39 |
| CDY13770 | Canola | nucleus | 9.48 | 26.97 |
| CDX76934 | Canola | nucleus | 9.18 | 26.27 |
| CDX69375 | Canola | nucleus | 9.28 | 25.34 |
| CDY68864 | Canola | nucleus | 9.28 | 25.27 |
| CDX72275 | Canola | cytosol | 9.08 | 24.86 |
| CDY63898 | Canola | nucleus | 9.28 | 23.62 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 9.77 | 20.33 |
| CDY23262 | Canola | nucleus | 10.56 | 19.56 |
| CDX97571 | Canola | mitochondrion | 13.62 | 19.49 |
| CDY40119 | Canola | nucleus | 11.15 | 19.35 |
| CDX98449 | Canola | mitochondrion | 13.43 | 19.32 |
| CDX76553 | Canola | cytosol | 12.24 | 19.31 |
| CDX85744 | Canola | cytosol | 11.06 | 19.24 |
| CDX75770 | Canola | mitochondrion, nucleus | 12.44 | 18.98 |
| CDX87681 | Canola | nucleus | 11.75 | 18.89 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 10.76 | 18.47 |
| CDY36465 | Canola | cytosol | 10.66 | 18.4 |
| CDY37145 | Canola | cytosol | 11.94 | 18.17 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 10.66 | 18.09 |
| CDY50263 | Canola | cytosol | 4.74 | 17.71 |
| CDY02782 | Canola | nucleus | 13.72 | 17.35 |
| CDY11838 | Canola | nucleus, plastid | 14.02 | 17.34 |
| CDY58499 | Canola | endoplasmic reticulum | 12.24 | 17.2 |
| CDX88651 | Canola | nucleus, plastid | 13.92 | 17.11 |
| CDY32735 | Canola | nucleus | 13.52 | 17.1 |
| CDX77686 | Canola | endoplasmic reticulum | 12.73 | 17.09 |
| CDY57464 | Canola | nucleus | 14.12 | 16.86 |
| CDY55010 | Canola | nucleus | 14.12 | 16.82 |
| CDX87682 | Canola | cytosol | 0.1 | 3.03 |
Protein Annotations
| MapMan:19.2.3.1.1.7 | Gene3D:3.30.60.180 | Gene3D:3.90.70.10 | GO:A0A078DZD6 | EnsemblPlants:CDX92643 | ProteinID:CDX92643 |
| ProteinID:CDX92643.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | EnsemblPlantsGene:GSBRNA2T00154451001 | InterPro:IPR002893 | InterPro:IPR028889 | PFAM:PF00443 |
| PFAM:PF01753 | ScanProsite:PS00972 | ScanProsite:PS01360 | PFscan:PS50235 | PFscan:PS50865 | PANTHER:PTHR45492 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF144232 | SUPFAM:SSF54001 | TMHMM:TMhelix | UniParc:UPI0004EE20A7 |
| InterPro:USP_CS | InterPro:USP_dom | InterPro:Znf_MYND | SEG:seg | : | : |
Description
BnaC07g39010D
Coordinates
chrLK031873:-:137014..141998
Molecular Weight (calculated)
111113.0 Da
IEP (calculated)
7.633
GRAVY (calculated)
-0.487
Length
1013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLIVLDLGLS SLFLLISLVL PVVAFVVRRK WRLAALRREE IRRLLIHASE EAARAELESS VEFSSVYVPN SFQCPVCYSP ASTRCSRCKA VRYCSGKCQI
0101: IHWRQGHRDE CHPASVLYNT DDEKSDCDLK FREGSEGLTP DETLLLHTEQ ATTVQVREAI LSDPVSSPED GGGESADNKD ELMDKEEAVS VAETSGSSFS
0201: GFSSSPRNDS GDDDISFCDS SSSSDSEISE PPRDAHVSVE SEETCFSNID DVKSKPLSPK FVQLVESAND LAKLPKLSLN KPGGDAGQKP SQSSSLVSSV
0301: GTDGHPRSAD PSLMKSSDFW GTALGSVERV TENCDGSKPG EPGKSSLHLS LGSSRDISAA EVSHKNKNSE ETTRAALGTR KFSGGVNLKE RIAKRSDEAE
0401: ISLPRSSSLD APSHLNPTVL STVTLQKSKS TSAGSGFMLA PMKVGEVQRL SSKASDTREF ADVMKHSALG AKSGRVLDHQ KQNGLDVHRI SSLNGRSGMK
0501: ASVLKVVDQW TRPKSLAENE IAGNHSHKGL FSYELFSKLY TSKIEFQPCG LINCGNSCFA NVVFQCLMFT APLTTYFLQQ LHSRTCLNKE QCFTCGFEKL
0601: VLKAKEGKSS LSPNGLLSQL QSIGIRLGNG KQEDAHEFLR FVVDIMQSVC IKASGYDMPK TKKLEDTTLI GLTFGGYLRS KIKCMKCQEK SERREKMMDL
0701: TVEIDGDIST LEEALRRFTR TEILDGENKY KCGRCKSYER AKKKLKITEP PNVLTIALKR FQSGKFGKLN KLIRFPETLD LTPYVSGGSE KSHDYKLYGV
0801: IVHLDTMNAA FSGHYVCYVR NSQNKWYKAD DSTVVTSDVE RVLTMGAYML FYERCSPMPP RLVVCNKSEA SNKKGSVPVP KTTVSRSVST ASHVLSSNTP
0901: GGDRPGNIQS FYSSFQRLQR ILEEDSSSDS SSLFDSTSDE CSCSTDSTSM DDFADFIFGD NQGRAHGQSE APSPTSSSSS SSPPFTRHSR LGDLSRSSQE
1001: TCRNSRHRVS LGR
0101: IHWRQGHRDE CHPASVLYNT DDEKSDCDLK FREGSEGLTP DETLLLHTEQ ATTVQVREAI LSDPVSSPED GGGESADNKD ELMDKEEAVS VAETSGSSFS
0201: GFSSSPRNDS GDDDISFCDS SSSSDSEISE PPRDAHVSVE SEETCFSNID DVKSKPLSPK FVQLVESAND LAKLPKLSLN KPGGDAGQKP SQSSSLVSSV
0301: GTDGHPRSAD PSLMKSSDFW GTALGSVERV TENCDGSKPG EPGKSSLHLS LGSSRDISAA EVSHKNKNSE ETTRAALGTR KFSGGVNLKE RIAKRSDEAE
0401: ISLPRSSSLD APSHLNPTVL STVTLQKSKS TSAGSGFMLA PMKVGEVQRL SSKASDTREF ADVMKHSALG AKSGRVLDHQ KQNGLDVHRI SSLNGRSGMK
0501: ASVLKVVDQW TRPKSLAENE IAGNHSHKGL FSYELFSKLY TSKIEFQPCG LINCGNSCFA NVVFQCLMFT APLTTYFLQQ LHSRTCLNKE QCFTCGFEKL
0601: VLKAKEGKSS LSPNGLLSQL QSIGIRLGNG KQEDAHEFLR FVVDIMQSVC IKASGYDMPK TKKLEDTTLI GLTFGGYLRS KIKCMKCQEK SERREKMMDL
0701: TVEIDGDIST LEEALRRFTR TEILDGENKY KCGRCKSYER AKKKLKITEP PNVLTIALKR FQSGKFGKLN KLIRFPETLD LTPYVSGGSE KSHDYKLYGV
0801: IVHLDTMNAA FSGHYVCYVR NSQNKWYKAD DSTVVTSDVE RVLTMGAYML FYERCSPMPP RLVVCNKSEA SNKKGSVPVP KTTVSRSVST ASHVLSSNTP
0901: GGDRPGNIQS FYSSFQRLQR ILEEDSSSDS SSLFDSTSDE CSCSTDSTSM DDFADFIFGD NQGRAHGQSE APSPTSSSSS SSPPFTRHSR LGDLSRSSQE
1001: TCRNSRHRVS LGR
0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
Arabidopsis Description
UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.