Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24560.1 | EES08452 | AT4G13930.1 | 23232097 |
| AT4G24560.1 | OQU91027 | AT4G37930.1 | 23232097 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d050489_P001 | Maize | nucleus | 49.26 | 86.87 |
| Os08t0478500-01 | Rice | plastid | 64.89 | 53.48 |
| TraesCS7D01G280800.4 | Wheat | plastid | 65.38 | 53.12 |
| TraesCS7A01G282200.4 | Wheat | plastid | 64.89 | 52.88 |
| TraesCS7B01G179000.2 | Wheat | plastid | 65.14 | 52.87 |
| HORVU7Hr1G064340.3 | Barley | endoplasmic reticulum | 65.14 | 52.87 |
| GSMUA_Achr10P... | Banana | nucleus | 25.06 | 49.75 |
| GSMUA_Achr7P19010_001 | Banana | nucleus | 26.3 | 46.09 |
| OQU89635 | Sorghum | vacuole | 43.3 | 38.27 |
| GSMUA_Achr5P22990_001 | Banana | vacuole | 38.71 | 34.71 |
| AT5G65450.2 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, nucleus | 30.77 | 33.07 |
| VIT_00s0407g00030.t01 | Wine grape | golgi, vacuole | 29.9 | 32.57 |
| CDY08792 | Canola | vacuole | 29.65 | 31.91 |
| VIT_00s0199g00030.t01 | Wine grape | vacuole | 35.48 | 31.67 |
| CDY14564 | Canola | golgi | 29.9 | 31.63 |
| Bra024386.1-P | Field mustard | golgi | 29.78 | 31.29 |
| KRH69660 | Soybean | golgi | 34.62 | 29.74 |
| KRH74502 | Soybean | golgi, plasma membrane, vacuole | 33.99 | 29.56 |
| GSMUA_Achr10P... | Banana | golgi | 15.76 | 28.22 |
| EES12269 | Sorghum | cytosol | 12.66 | 27.72 |
| KRH16837 | Soybean | golgi | 35.36 | 27.27 |
| EER92723 | Sorghum | nucleus | 12.28 | 27.05 |
| KRH72452 | Soybean | golgi, plasma membrane | 34.37 | 26.74 |
| KRH52893 | Soybean | extracellular, golgi, vacuole | 29.16 | 26.46 |
| KRH62182 | Soybean | golgi, vacuole | 37.22 | 26.36 |
| Solyc04g076210.2.1 | Tomato | nucleus | 35.86 | 26.3 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 31.89 | 25.5 |
| VIT_18s0001g07370.t01 | Wine grape | golgi, vacuole | 38.71 | 25.47 |
| CDY11021 | Canola | golgi | 31.64 | 25.27 |
| Bra019219.1-P | Field mustard | golgi | 31.51 | 25.1 |
| CDX92643 | Canola | golgi | 31.39 | 24.98 |
| CDY03441 | Canola | golgi | 30.89 | 24.58 |
| GSMUA_Achr7P19020_001 | Banana | endoplasmic reticulum, golgi | 11.66 | 24.35 |
| Bra013814.1-P | Field mustard | golgi | 30.52 | 24.12 |
| CDY34291 | Canola | golgi | 30.52 | 24.12 |
| OQU84698 | Sorghum | endoplasmic reticulum, plasma membrane, vacuole | 28.78 | 24.02 |
| EES07024 | Sorghum | mitochondrion | 11.66 | 22.43 |
| KXG20513 | Sorghum | golgi, plasma membrane | 23.45 | 19.36 |
| EES12962 | Sorghum | plastid | 12.78 | 18.23 |
| KXG22316 | Sorghum | plastid | 14.76 | 17.58 |
| OQU85579 | Sorghum | nucleus | 15.51 | 16.78 |
| EER89337 | Sorghum | nucleus | 17.49 | 15.38 |
| OQU92076 | Sorghum | nucleus | 14.02 | 13.05 |
| OQU90420 | Sorghum | mitochondrion | 11.41 | 12.48 |
| OQU81355 | Sorghum | cytosol, nucleus, plastid | 1.12 | 11.54 |
Protein Annotations
| MapMan:19.2.3.1.1.7 | Gene3D:3.90.70.10 | UniProt:A0A1Z5RA55 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR028889 | EnsemblPlants:OQU80649 | ProteinID:OQU80649 |
| ProteinID:OQU80649.1 | ProteinID:OQU80650.1 | PFAM:PF00443 | ScanProsite:PS00972 | PFscan:PS50235 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Peptidase_C19_UCH | EnsemblPlantsGene:SORBI_3007G159900 | SUPFAM:SSF54001 | UniParc:UPI000B4244D8 | InterPro:USP_CS | InterPro:USP_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:59420427..59428481
Molecular Weight (calculated)
88663.2 Da
IEP (calculated)
7.252
GRAVY (calculated)
-0.666
Length
806 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKPVVGSET SDAHHNLKSS NDKSKHMPSE AVCTSAEVPG GHQSNSTVEI SQNVPVPVNS SKMGSSIKHA FFVEDGSSTE DLNGVSPCKS QASPNINGHS
101: SFANEEFCNH SKEHQRAKDA SVVEDCSQTS NTREIEDSSI PQAVASVVLE TKSSRTPINV ELERSKTKPI RNDRIQSTKP VPSALTVDKA TSVRGSCSVT
201: PNPSKIADNL PDRSFKKPSD RSGSTANNLA TSLKKMVRQQ TAPKVVRHYP SESTLFPYEL FVKLYGKVEL NPFGLHNVGN SCYANAVLQC LMFTRPLTTY
301: LLEGLHSKNC SQKGWCFMCE FEKLIVEGKR RKTALSPTGI LSHLHDIGSS LGPGKQEDAH EFLRYAIDAM QSVCMKEASK GGVIQSMEET TLVQLIFGGY
401: LRSKIKCSRC HVSSEQCEPM LDLTVEIDGD ISSLDEALER FTSTEVLDGE NKYHCSRCKS YERAKKKLTI EEAPNVLTIA LKRYQSGKFG KISKAIRFPD
501: TLNMGHYMNP DTDDISPVYS LYAVVVHHDV MNAAFSGHYV CYVKDTQGKW FKADDSQVKP VSLDNVMSKC AYMLLYARCS PRAPSSVRQA MGDPAHPKKA
601: KQKVVSGGTT WRGGSLNRHQ AGQQHRDQTA DDLTHAFDEY RDVPYSPSDS PSPSESSSLF SNSDAGSHST VSTDSSESTR NSTSTEEYEY MFGAADQMYS
701: GGSMGGAPVE SDYPTYSRLR SSLNTSSSGR EAYSADSSAE HRLQGGWVEG DESPSLLYTD RSNQQWSSKL TDQYRQLDRS GHDPGETRGG VLSRRPSRDR
801: TAQTFY
101: SFANEEFCNH SKEHQRAKDA SVVEDCSQTS NTREIEDSSI PQAVASVVLE TKSSRTPINV ELERSKTKPI RNDRIQSTKP VPSALTVDKA TSVRGSCSVT
201: PNPSKIADNL PDRSFKKPSD RSGSTANNLA TSLKKMVRQQ TAPKVVRHYP SESTLFPYEL FVKLYGKVEL NPFGLHNVGN SCYANAVLQC LMFTRPLTTY
301: LLEGLHSKNC SQKGWCFMCE FEKLIVEGKR RKTALSPTGI LSHLHDIGSS LGPGKQEDAH EFLRYAIDAM QSVCMKEASK GGVIQSMEET TLVQLIFGGY
401: LRSKIKCSRC HVSSEQCEPM LDLTVEIDGD ISSLDEALER FTSTEVLDGE NKYHCSRCKS YERAKKKLTI EEAPNVLTIA LKRYQSGKFG KISKAIRFPD
501: TLNMGHYMNP DTDDISPVYS LYAVVVHHDV MNAAFSGHYV CYVKDTQGKW FKADDSQVKP VSLDNVMSKC AYMLLYARCS PRAPSSVRQA MGDPAHPKKA
601: KQKVVSGGTT WRGGSLNRHQ AGQQHRDQTA DDLTHAFDEY RDVPYSPSDS PSPSESSSLF SNSDAGSHST VSTDSSESTR NSTSTEEYEY MFGAADQMYS
701: GGSMGGAPVE SDYPTYSRLR SSLNTSSSGR EAYSADSSAE HRLQGGWVEG DESPSLLYTD RSNQQWSSKL TDQYRQLDRS GHDPGETRGG VLSRRPSRDR
801: TAQTFY
0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
Arabidopsis Description
UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.