CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022414_P001	Maize	cytosol	67.57	90.22
Os07t0661300-01	Rice	cytosol, plasma membrane	46.54	70.14
GSMUA_Achr1P11380_001	Banana	cytosol	33.65	66.49
OQU81355	Sorghum	cytosol, nucleus, plastid	6.65	62.82
GSMUA_Achr8P09770_001	Banana	cytosol	34.06	58.64
TraesCS2A01G127200.3	Wheat	cytosol	52.51	51.74
HORVU2Hr1G022340.2	Barley	cytosol	52.65	51.12
TraesCS2D01G129600.2	Wheat	cytosol	53.05	50.71
TraesCS2B01G149000.2	Wheat	cytosol	52.24	49.94
Zm00001d007096_P007	Maize	mitochondrion	77.34	48.18
EES12269	Sorghum	cytosol	12.35	24.73
EER92723	Sorghum	nucleus	12.21	24.59
EES07024	Sorghum	mitochondrion	12.48	21.96
EES12962	Sorghum	plastid	13.3	17.35
OQU85579	Sorghum	nucleus	12.89	12.75
KXG22316	Sorghum	plastid	11.67	12.7
OQU80649	Sorghum	nucleus	12.48	11.41
EER89337	Sorghum	nucleus	13.98	11.23
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	14.65	11.18
KXG20513	Sorghum	golgi, plasma membrane	14.38	10.86
OQU89635	Sorghum	vacuole	13.43	10.86
OQU92076	Sorghum	nucleus	11.8	10.05

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	UniProt:A0A1W0W7P3	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	EnsemblPlants:OQU90420	ProteinID:OQU90420
ProteinID:OQU90420.1	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	EnsemblPlantsGene:SORBI_3002G405500	SUPFAM:SSF54001	UniParc:UPI0009DC8795	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:75502060..75508368

Molecular Weight (calculated)

79956.9 Da

IEP (calculated)

10.150

GRAVY (calculated)

-0.359

Length

737 amino acids

Sequence
(BLAST)

001: MDLFFKHTLR VVQTPKRVRS PTAKKSARSG PWHPTFRVQQ PKPTNRPPAS TNTTNPSNAP VRCRPPSSLP RPRLPVPAPP RLSPPQTLHL GPRPSAFAVP
101: GSPPPKPHTA APAPAPNRTL PCGRPRARTA TPTAPPPAAA AFDVSHLRPR LPLAPVAEEL LPRGHPRSGR FLRPAIGLPT AAEMSGGGGE KMLLFGSFTE
201: DETKLFQGQP LKSPTKSTSK ECERMEIQFG TLNFSVLNLE KISISSVVLP AKSANGDTSA ITKENPCGNE KKAAGSSLPN GGPVVTNGCP PVNVPADNGV
301: FENVAKTETV VPSVVPVKSI SNPTPQMTLE VHKDVIEPTQ SRKLDKEREI IENGSPVVET PIVAAPVEEA VTSLNKKPSQ NMPLLPHGLR NTGNICFLNA
401: TLQALLSCSP FVHLLQDLRN RSIPKVGYPT LNAFVELISQ FDVADESVIK KNEKAITVAA KPLNPAMFDA VLRNFTPDVP AGVTARPRQE DAQEFLSFAM
501: DRMHDELLKL NGNGSDSKEG MVVSSVDDDA WETVGRKNKS AIVRTQSFVP SELSAIFGGQ LQSVVKATGN KASATVQPFL LLHLDIFPDA VQTLNDALHL
601: FSTPESLEGY RTAAGKAGLV TARKSFKIHA LSKIMIMHLK RFSYGNHGST KVYKPLHFPK ELVLSRELLS SPSTEGRKYE LVATITHHGR DPYRGHYTAH
701: AKHANGQWLR FDDDAVVPVA ENDVLHDQAY VLFYKQV

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.