Factsheet for GSMUA_Achr1P11380_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72275	Canola	cytosol	68.63	69.19
GSMUA_Achr8P09770_001	Banana	cytosol	77.75	67.76
Bra024037.1-P	Field mustard	cytosol	67.56	63.0
PGSC0003DMT400033184	Potato	cytosol	25.2	51.37
KRH39864	Soybean	cytosol	73.19	51.32
PGSC0003DMT400033182	Potato	cytosol	19.3	51.06
PGSC0003DMT400033175	Potato	mitochondrion	22.52	50.3
KRH23933	Soybean	cytosol	72.92	50.28
VIT_13s0019g01690.t01	Wine grape	cytosol	73.73	49.73
Os07t0661300-01	Rice	cytosol, plasma membrane	65.15	49.69
Solyc11g065210.1.1	Tomato	cytosol	69.44	48.5
PGSC0003DMT400034298	Potato	cytosol	68.9	48.13
CDY23262	Canola	nucleus	70.24	47.9
Solyc01g068240.2.1	Tomato	cytosol	68.36	47.84
AT4G30890.2	Thale cress	cytosol	68.1	46.1
Bra010268.1-P	Field mustard	cytosol	69.97	45.87
Zm00001d022414_P001	Maize	cytosol	65.95	44.57
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	70.24	44.41
CDY28224	Canola	endoplasmic reticulum, vacuole	70.24	44.41
CDY36465	Canola	cytosol	69.71	44.29
CDX68701	Canola	endoplasmic reticulum, extracellular	69.97	43.72
PGSC0003DMT400033173	Potato	mitochondrion	33.51	35.21
OQU90420	Sorghum	mitochondrion	66.49	33.65
TraesCS2A01G127200.3	Wheat	cytosol	64.34	32.09
HORVU2Hr1G022340.2	Barley	cytosol	63.81	31.36
TraesCS2B01G149000.2	Wheat	cytosol	64.61	31.26
TraesCS2D01G129600.2	Wheat	cytosol	64.61	31.26
GSMUA_Achr7P19160_001	Banana	mitochondrion	21.45	26.23
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	24.4	25.85
GSMUA_Achr10P...	Banana	cytosol	23.86	25.8
GSMUA_Achr10P...	Banana	nucleus	24.93	24.87
GSMUA_Achr8P14390_001	Banana	cytosol	24.4	24.86
GSMUA_Achr7P05090_001	Banana	vacuole	26.81	21.41
GSMUA_Achr7P05330_001	Banana	cytosol	18.23	21.32
Zm00001d007096_P007	Maize	mitochondrion	63.81	20.12
GSMUA_Achr7P19170_001	Banana	cytosol	6.97	19.4
GSMUA_Achr3P04660_001	Banana	nucleus	26.54	16.5
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	25.2	16.04
GSMUA_Achr7P17050_001	Banana	plastid	21.45	15.33
GSMUA_Achr9P10330_001	Banana	mitochondrion	23.06	13.8
GSMUA_Achr7P19010_001	Banana	nucleus	15.28	12.39
GSMUA_Achr10P...	Banana	nucleus	13.14	12.07
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	25.47	11.34
GSMUA_Achr5P22990_001	Banana	vacuole	25.2	10.46
GSMUA_Achr2P20080_001	Banana	plasma membrane	26.01	10.31
GSMUA_Achr4P01920_001	Banana	nucleus	26.54	10.25
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	22.79	10.01
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	24.66	9.94
GSMUA_AchrUn_...	Banana	golgi, vacuole	25.2	9.28
GSMUA_Achr10P...	Banana	golgi	10.72	8.89
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	26.27	8.66
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	8.31	8.03

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr1G11380_001	EnsemblPlants:GSMUA_Achr1P11380_001	EnsemblPlants:GSMUA_Achr1T11380_001	InterPro:IPR028889
UniProt:M0RYZ7	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI00029560E5	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 24 [Source:GMGC_GENE;Acc:GSMUA_Achr1G11380_001]

Coordinates

chr1:+:8706769..8714769

Molecular Weight (calculated)

41055.5 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.146

Length

373 amino acids

Sequence
(BLAST)

001: MVEVLKTSGE KEPVVKGLLP RGLINSGNLC FLNATLQGLL SCSPFVQLLQ DLRNQTIPKS GYQTLHAFVN FISEFDMPGD SSTKDTGKRV LETGKPFSPI
101: MFDAVLKCFT PDLPIGILGR PRQEDAQEFL SFVMDQMHDE LLKLEGYMSD AIGSQAPLIS SAEDDGWETV GPKNKSAVTR TQSFVPSQLS GIFGGQLRSL
201: VKARGNKASA TVQPFLLLHL DIFPEAVHTI EDALHLFSAP ETLEGYKASA GKAGVVSASK SVKIQKLSKI MILHLMRFSY GSKGSTKLHK PVHFPLELVL
301: GRELLVSSSP EGRRYELVAT ITHHGREPSK GHYTADARYS NGIWLRYDDA TVTAVTTNKV LHDQAYVLFY KQM

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.