Factsheet for GSMUA_Achr7P19020_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
cytosol 1
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P06520_001
GSMUA_Achr8P00310_001
GSMUA_Achr9P01620_001
GSMUA_Achr9P07310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	GSMUA_Achr6P06520_001	AT4G13930.1	23232097
AT4G24560.1	GSMUA_Achr8P00310_001	AT4G13930.1	23232097
AT4G24560.1	GSMUA_Achr9P01620_001	AT4G13930.1	23232097
AT4G24560.1	GSMUA_Achr9P07310_001	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	golgi	66.84	57.33
GSMUA_Achr5P22990_001	Banana	vacuole	65.54	28.14
GSMUA_Achr7P05090_001	Banana	vacuole	24.87	20.56
GSMUA_Achr7P19170_001	Banana	cytosol	6.99	20.15
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	38.08	19.86
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	35.75	18.4
KRH52893	Soybean	extracellular, golgi, vacuole	41.71	18.13
CDY08792	Canola	vacuole	34.97	18.02
Bra024386.1-P	Field mustard	golgi	35.49	17.86
CDY14564	Canola	golgi	35.23	17.85
GSMUA_AchrUn_...	Banana	golgi, vacuole	43.26	16.49
VIT_00s0199g00030.t01	Wine grape	vacuole	38.08	16.28
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.12	16.27
TraesCS5B01G243400.1	Wheat	vacuole	38.6	16.27
KRH16837	Soybean	golgi	43.52	16.08
KRH72452	Soybean	golgi, plasma membrane	43.01	16.02
KRH74502	Soybean	golgi, plasma membrane, vacuole	38.34	15.97
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	37.05	15.8
KRH69660	Soybean	golgi	38.34	15.78
Os08t0478500-01	Rice	plastid	39.9	15.75
TraesCS7D01G280800.4	Wheat	plastid	40.16	15.62
TraesCS7B01G179000.2	Wheat	plastid	40.16	15.61
TraesCS7A01G282200.4	Wheat	plastid	39.9	15.57
CDY11021	Canola	golgi	40.67	15.56
Bra019219.1-P	Field mustard	golgi	40.67	15.51
CDX92643	Canola	golgi	40.41	15.4
CDY03441	Canola	golgi	40.41	15.4
AT4G24560.1	Thale cress	extracellular, golgi	39.64	15.18
OQU89635	Sorghum	vacuole	35.75	15.13
CDY34291	Canola	golgi	39.9	15.1
Bra013814.1-P	Field mustard	golgi	39.9	15.1
TraesCS5A01G246000.3	Wheat	vacuole	37.05	14.86
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	27.98	14.65
Zm00001d020769_P005	Maize	nucleus	32.38	14.6
KRH62182	Soybean	golgi, vacuole	41.97	14.24
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	30.57	14.08
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	44.3	13.96
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	30.83	12.85
Solyc04g076210.2.1	Tomato	nucleus	36.53	12.83
GSMUA_Achr2P20080_001	Banana	plasma membrane	30.31	12.43
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	31.09	12.08
OQU80649	Sorghum	nucleus	24.35	11.66
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	9.59	10.51
GSMUA_Achr7P17050_001	Banana	plastid	13.99	10.34
GSMUA_Achr10P...	Banana	cytosol	8.55	9.57
GSMUA_Achr8P14390_001	Banana	cytosol	8.81	9.29
GSMUA_Achr7P05330_001	Banana	cytosol	7.51	9.09
GSMUA_Achr10P...	Banana	nucleus	8.55	8.82
GSMUA_Achr1P11380_001	Banana	cytosol	8.03	8.31
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	23.83	8.13
GSMUA_Achr3P04660_001	Banana	nucleus	12.18	7.83
GSMUA_Achr8P09770_001	Banana	cytosol	8.29	7.48
GSMUA_Achr9P10330_001	Banana	mitochondrion	10.1	6.26
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	9.33	6.14
GSMUA_Achr4P01920_001	Banana	nucleus	11.66	4.66
GSMUA_Achr7P19160_001	Banana	mitochondrion	2.59	3.28
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	3.89	1.77
GSMUA_Achr7P19010_001	Banana	nucleus	0.0	0.0
GSMUA_Achr10P...	Banana	nucleus	0.0	0.0
Zm00001d050489_P001	Maize	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.60.180	Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr7G19020_001
EnsemblPlants:GSMUA_Achr7P19020_001	EnsemblPlants:GSMUA_Achr7T19020_001	InterPro:IPR002893	InterPro:IPR028889	UniProt:M0TIT9	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI000295602D
InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:	:

Description

Putative Ubiquitin carboxyl-terminal hydrolase 17 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19020_001]

Coordinates

chr7:-:21823553..21829213

Molecular Weight (calculated)

41553.7 Da

IEP (calculated)

8.543

GRAVY (calculated)

-0.136

Length

386 amino acids

Sequence
(BLAST)

001: MPLHGDLGLS GPAVLVLLLL GPAFALVVRR RWRLAAARQA EVRRLVRLAA EETARAEMEA MVAYSAASAA AAAAAAAATA TATATASVAT IAKDTSAWPE
101: CPVCFSPATA RCARCKAVRY CSGKCQIIHW RQGHKDECHP PPESTSGSLE HSLGSTSGSL VPVSNGIHLR TSSKSENSYA SASLEPKSQS EHKEALTSNM
201: KTSGPVANGT NTQLQSLKSR TLGSLASVSD QLLSNGAPAT FDSLQNGMST SDTRVVKEVT SKISRHYSSE LMLFPYDRFI KLYNSDKIEL RPCGLINCGN
301: SCYANVVLQC LTFTRPLTAY LLEGLHSRIC MRPKKEWCFT CEFESLVMLV KNGRSPLSPI GILSHLHNIG SNFGHGQEED AHEFLR

Best Arabidopsis Sequence Match ( AT5G65450.1 )
(BLAST)

001: MMLVFLLIRR QWRSASVRRE EVIRLIALAT EESYLAEEVR PATVDYGGDS VSDVYRCAVC LYPTTTRCSQ CKSVRYCSSK CQILHWRRGH KEECRSPDYD
101: EEKEEYVQSD YDAKESNVDF PSRGTAYESS SNVSVDVACD MSTSRPSIHK VQPRSEAVDF TTSLNIKDNL YETRPLSRKK SRNRTDKVES ASNYSKGKTD
201: AKLRKLGNQN SRRSGDSANM SISDQFLSVG FEEEMNALKH ERITSEPSSA SAAMSSSSTL LLPSKANSKP KVSQASSSGL KTSVQKVVQH FRPPQSSKKS
301: QPSSSIDEMS FSYELFVKLY CDRVELQPFG LVNLGNSCYA NAVLQCLAFT RPLISYLIRG LHSKTCRKKS WCFVCEFEHL ILKARGGESP LSPIKILSKL
401: QKIGKHLGPG KEEDAHEFLR CAVDTMQSVF LKEAPAAGPF AEETTLVGLT FGGYLHSKIK CMACLHKSER PELMMDLTVE IDGDIGSLEE ALAQFTAYEV
501: LDGENRYFCG RCKSYQKAKK KLMILEGPNI LTVVLKRFQS DNFGKLSKPI HFPELLDISP YMSDPNHGDH PVYSLYAVVV HLDAMSTLFS GHYVCYIKTL
601: DGDWFKIDDS NVFPVQLETV LLEGAYMLLY ARDSPRPVSK NGGRKSKQRR NLAAIPSRKG NKKQRDGDNN SLLPRVDWSS GSLSSMFSSS DTTSSCSTKD
701: SSGIENLSDY LFGGVEPVWK WDRHNKSQTF D

Arabidopsis Description

UBP17ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.