Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P06520_001 | Banana | cytosol | 91.55 | 90.11 |
| Zm00001d040457_P001 | Maize | mitochondrion | 19.63 | 88.66 |
| GSMUA_Achr9P07310_001 | Banana | cytosol | 79.22 | 85.68 |
| VIT_05s0029g00310.t01 | Wine grape | cytosol | 91.1 | 84.71 |
| CDY01173 | Canola | cytosol | 82.88 | 83.64 |
| CDY50421 | Canola | cytosol | 82.88 | 83.64 |
| Solyc05g053810.2.1 | Tomato | nucleus, plastid | 89.27 | 83.01 |
| Bra014001.1-P | Field mustard | cytosol | 82.19 | 82.95 |
| CDY47310 | Canola | cytosol | 82.19 | 82.95 |
| PGSC0003DMT400040717 | Potato | cytosol | 88.81 | 82.59 |
| GSMUA_Achr8P00310_001 | Banana | cytosol | 47.03 | 81.75 |
| AT4G13930.1 | Thale cress | cytosol | 87.67 | 81.53 |
| Bra032749.1-P | Field mustard | cytosol | 87.21 | 81.1 |
| PGSC0003DMT400011868 | Potato | cytosol | 86.99 | 80.89 |
| CDY69223 | Canola | cytosol | 86.76 | 80.68 |
| Solyc12g098490.1.1 | Tomato | extracellular, nucleus, unclear | 86.76 | 80.68 |
| EES08452 | Sorghum | cytosol | 86.53 | 80.47 |
| Os11t0455800-01 | Rice | plasma membrane | 86.3 | 80.25 |
| TraesCS2A01G493700.1 | Wheat | plastid | 85.84 | 79.83 |
| TraesCS2D01G493600.1 | Wheat | cytosol | 85.84 | 79.83 |
| TraesCS2B01G521700.1 | Wheat | cytosol | 85.62 | 79.62 |
| KRH58850 | Soybean | cytosol | 86.76 | 79.33 |
| Zm00001d049234_P001 | Maize | plastid | 86.3 | 71.86 |
| AT4G13890.1 | Thale cress | cytosol | 76.71 | 71.49 |
| HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 85.84 | 68.24 |
| KRH42751 | Soybean | endoplasmic reticulum, nucleus | 88.58 | 67.83 |
| GSMUA_Achr10P... | Banana | cytosol | 50.68 | 58.42 |
| GSMUA_Achr7P27360_001 | Banana | mitochondrion | 57.76 | 49.22 |
| GSMUA_Achr6P23140_001 | Banana | mitochondrion | 56.39 | 47.5 |
| GSMUA_Achr3P30760_001 | Banana | mitochondrion | 54.57 | 45.61 |
| GSMUA_Achr6P17750_001 | Banana | cytosol | 58.45 | 44.76 |
| GSMUA_Achr10P... | Banana | cytosol | 56.39 | 42.96 |
| GSMUA_Achr10P... | Banana | vacuole | 15.75 | 40.59 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | Gene3D:3.40.640.10 |
| MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 | GO:GO:0005488 | GO:GO:0006545 |
| GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 | EnsemblPlantsGene:GSMUA_Achr9G01620_001 | EnsemblPlants:GSMUA_Achr9P01620_001 | EnsemblPlants:GSMUA_Achr9T01620_001 |
| InterPro:IPR015421 | UniProt:M0TWL9 | PFAM:PF00464 | PIRSF:PIRSF000412 | ScanProsite:PS00096 | PANTHER:PTHR11680 |
| PANTHER:PTHR11680:SF11 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS |
| UniParc:UPI000295AB13 | SEG:seg | : | : | : | : |
Description
Serine hydroxymethyltransferase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G01620_001]
Coordinates
chr9:-:1255347..1259304
Molecular Weight (calculated)
48103.5 Da
IEP (calculated)
7.559
GRAVY (calculated)
-0.282
Length
438 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVSEWGLS PLSAVDPEIH DLIEHEKRRQ SHGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GNEHIDAIEN LCRSRALAAY QLDPAKWGVN
101: VQPYSGSPAN FAAYTAVLNP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VSPVTGYIDY DKLEEKALDF RPKLIICGGS AYPRDWDYAR
201: FRSIADKCGA LLLCDMAHIS GLVAAQEAAN PFEFCDVVTT TTHKSLRGPR SGMIFYRKGP KPPKKGQPED AQAMTPGFKA YAKQVRANAV ALGNYLMRKG
301: YKLVTDGTEN HLVLWDLRPL GLTGNKVEKL CDLCNITVNK NAVFGDSSAL APGGVRIGAP AMTSRGLVEK DFEQIAEFLH QAVTLCLSIQ KEHGKLLKDF
401: NKGLVNNKDI EELKAAVEKF SALFDMPGFQ MSAMKYKD
101: VQPYSGSPAN FAAYTAVLNP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VSPVTGYIDY DKLEEKALDF RPKLIICGGS AYPRDWDYAR
201: FRSIADKCGA LLLCDMAHIS GLVAAQEAAN PFEFCDVVTT TTHKSLRGPR SGMIFYRKGP KPPKKGQPED AQAMTPGFKA YAKQVRANAV ALGNYLMRKG
301: YKLVTDGTEN HLVLWDLRPL GLTGNKVEKL CDLCNITVNK NAVFGDSSAL APGGVRIGAP AMTSRGLVEK DFEQIAEFLH QAVTLCLSIQ KEHGKLLKDF
401: NKGLVNNKDI EELKAAVEKF SALFDMPGFQ MSAMKYKD
001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
Arabidopsis Description
SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.