Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- peroxisome 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d020769_P005 | |
| Zm00001d050489_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G13930.1 | Zm00001d020769_P005 | AT4G24560.1 | 23232097 |
| AT4G13930.1 | Zm00001d050489_P001 | AT4G24560.1 | 23232097 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014001.1-P | Field mustard | cytosol | 90.72 | 20.28 |
| CDY01173 | Canola | cytosol | 90.72 | 20.28 |
| CDY47310 | Canola | cytosol | 90.72 | 20.28 |
| CDY50421 | Canola | cytosol | 90.72 | 20.28 |
| GSMUA_Achr9P01620_001 | Banana | cytosol | 88.66 | 19.63 |
| Os11t0455800-01 | Rice | plasma membrane | 94.85 | 19.53 |
| TraesCS2D01G493600.1 | Wheat | cytosol | 91.75 | 18.9 |
| TraesCS2B01G521700.1 | Wheat | cytosol | 91.75 | 18.9 |
| TraesCS2A01G493700.1 | Wheat | plastid | 91.75 | 18.9 |
| GSMUA_Achr9P07310_001 | Banana | cytosol | 78.35 | 18.77 |
| Bra032749.1-P | Field mustard | cytosol | 90.72 | 18.68 |
| CDY69223 | Canola | cytosol | 90.72 | 18.68 |
| AT4G13930.1 | Thale cress | cytosol | 89.69 | 18.47 |
| VIT_05s0029g00310.t01 | Wine grape | cytosol | 87.63 | 18.05 |
| Solyc05g053810.2.1 | Tomato | nucleus, plastid | 86.6 | 17.83 |
| PGSC0003DMT400040717 | Potato | cytosol | 86.6 | 17.83 |
| Zm00001d049234_P001 | Maize | plastid | 94.85 | 17.49 |
| KRH58850 | Soybean | cytosol | 85.57 | 17.33 |
| PGSC0003DMT400011868 | Potato | cytosol | 83.51 | 17.2 |
| Solyc12g098490.1.1 | Tomato | extracellular, nucleus, unclear | 82.47 | 16.99 |
| AT4G13890.1 | Thale cress | cytosol | 80.41 | 16.6 |
| HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 88.66 | 15.61 |
| GSMUA_Achr6P06520_001 | Banana | cytosol | 69.07 | 15.06 |
| KRH42751 | Soybean | endoplasmic reticulum, nucleus | 86.6 | 14.69 |
| Zm00001d030859_P001 | Maize | plastid | 83.51 | 12.88 |
| Zm00001d012247_P001 | Maize | cytosol | 71.13 | 11.79 |
| Zm00001d042661_P001 | Maize | cytosol | 70.1 | 11.56 |
| GSMUA_Achr8P00310_001 | Banana | cytosol | 13.4 | 5.16 |
| Zm00001d009738_P001 | Maize | cytosol, plastid | 3.09 | 1.38 |
Protein Annotations
| EnsemblPlants:Zm00001d040457_P001 | EnsemblPlants:Zm00001d040457_T001 | EnsemblPlantsGene:Zm00001d040457 | Gene3D:3.40.640.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016740 | GO:GO:0032259 | InterPro:IPR015421 |
| InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF11 | PFAM:PF00464 | ProteinID:ONM31389.1 |
| SUPFAM:SSF53383 | UniParc:UPI0008443207 | UniProt:A0A1D6MQV8 | MapMan:35.1 | : | : |
Description
Serine hydroxymethyltransferase 4
Coordinates
chr3:-:44319661..44322528
Molecular Weight (calculated)
10633.9 Da
IEP (calculated)
8.646
GRAVY (calculated)
0.005
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MRLHGYYTAG GKKISATSIY FESLPYKVSA TTGYIDYEKL EEKALDFRPK LIICGGSAYP RDWDYARLRA VADKVGALLL CDMAHISGLV AAQIPAG
001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE
Arabidopsis Description
SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.