Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P00310_001 | Banana | cytosol | 57.78 | 92.86 |
| GSMUA_Achr6P06520_001 | Banana | cytosol | 91.85 | 83.6 |
| GSMUA_Achr9P01620_001 | Banana | cytosol | 85.68 | 79.22 |
| Zm00001d040457_P001 | Maize | mitochondrion | 18.77 | 78.35 |
| VIT_05s0029g00310.t01 | Wine grape | cytosol | 88.89 | 76.43 |
| Solyc05g053810.2.1 | Tomato | nucleus, plastid | 87.16 | 74.95 |
| PGSC0003DMT400040717 | Potato | cytosol | 86.42 | 74.31 |
| Bra032749.1-P | Field mustard | cytosol | 85.93 | 73.89 |
| AT4G13930.1 | Thale cress | cytosol | 85.68 | 73.67 |
| Os11t0455800-01 | Rice | plasma membrane | 85.68 | 73.67 |
| CDY69223 | Canola | cytosol | 85.43 | 73.46 |
| EES08452 | Sorghum | cytosol | 85.19 | 73.25 |
| TraesCS2D01G493600.1 | Wheat | cytosol | 84.94 | 73.04 |
| TraesCS2A01G493700.1 | Wheat | plastid | 84.94 | 73.04 |
| PGSC0003DMT400011868 | Potato | cytosol | 84.94 | 73.04 |
| TraesCS2B01G521700.1 | Wheat | cytosol | 84.69 | 72.82 |
| Solyc12g098490.1.1 | Tomato | extracellular, nucleus, unclear | 84.69 | 72.82 |
| CDY50421 | Canola | cytosol | 77.28 | 72.12 |
| CDY01173 | Canola | cytosol | 77.28 | 72.12 |
| KRH58850 | Soybean | cytosol | 84.94 | 71.82 |
| CDY47310 | Canola | cytosol | 76.79 | 71.66 |
| Bra014001.1-P | Field mustard | cytosol | 76.79 | 71.66 |
| Zm00001d049234_P001 | Maize | plastid | 85.68 | 65.97 |
| AT4G13890.1 | Thale cress | cytosol | 75.31 | 64.89 |
| HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 84.94 | 62.43 |
| KRH42751 | Soybean | endoplasmic reticulum, nucleus | 85.93 | 60.84 |
| GSMUA_Achr10P... | Banana | cytosol | 48.89 | 52.11 |
| GSMUA_Achr7P27360_001 | Banana | mitochondrion | 57.28 | 45.14 |
| GSMUA_Achr6P17750_001 | Banana | cytosol | 61.98 | 43.88 |
| GSMUA_Achr6P23140_001 | Banana | mitochondrion | 56.05 | 43.65 |
| GSMUA_Achr10P... | Banana | cytosol | 60.0 | 42.26 |
| GSMUA_Achr3P30760_001 | Banana | mitochondrion | 54.07 | 41.79 |
| GSMUA_Achr10P... | Banana | vacuole | 8.89 | 21.18 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | Gene3D:3.40.640.10 |
| Gene3D:3.90.1150.10 | MapMan:50.2.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 | GO:GO:0005488 |
| GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 | EnsemblPlantsGene:GSMUA_Achr9G07310_001 | EnsemblPlants:GSMUA_Achr9P07310_001 |
| EnsemblPlants:GSMUA_Achr9T07310_001 | InterPro:IPR015421 | InterPro:IPR015422 | UniProt:M0TY90 | PFAM:PF00464 | PIRSF:PIRSF000412 |
| ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF11 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major |
| SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI000295365F | SEG:seg | : |
Description
Serine hydroxymethyltransferase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G07310_001]
Coordinates
chr9:-:4602530..4605568
Molecular Weight (calculated)
44316.1 Da
IEP (calculated)
7.608
GRAVY (calculated)
-0.223
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVAEWGLT PLSAVDPEIH DLIEHEKHRQ SHGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GASMSSPTPK ISATSIYFES LPYKVSSVTG
101: YIDYDKLEEK ALDFRPKLII CGGSAYPRDW DYARFRSIAD KCGALLLCDM AHISGLVAAQ EAANPFESCD VVTTTTHKSL RGPRSGMIFF RKGPKPPKKG
201: QPEDAVYDFE DKINFAVFPA LQGGPHNHQI AALAVALKQA TSPGFKAYAK QVKANAVALG NYLMSKGYKL VTDGTENHLV LWDLRPLGLT GNKVEKLCDL
301: CNITVNKNAV FGDSSALAPG GVRIGTPAMT SRGLIEKDFE RIAEFLHQAV TLCLSIQKEH GKLLKDFNKG LVNNKDIEEL KAAVDKFASS FHMPGFHMSA
401: MKYKE
101: YIDYDKLEEK ALDFRPKLII CGGSAYPRDW DYARFRSIAD KCGALLLCDM AHISGLVAAQ EAANPFESCD VVTTTTHKSL RGPRSGMIFF RKGPKPPKKG
201: QPEDAVYDFE DKINFAVFPA LQGGPHNHQI AALAVALKQA TSPGFKAYAK QVKANAVALG NYLMSKGYKL VTDGTENHLV LWDLRPLGLT GNKVEKLCDL
301: CNITVNKNAV FGDSSALAPG GVRIGTPAMT SRGLIEKDFE RIAEFLHQAV TLCLSIQKEH GKLLKDFNKG LVNNKDIEEL KAAVDKFASS FHMPGFHMSA
401: MKYKE
001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
Arabidopsis Description
SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.