Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- peroxisome 1
- mitochondrion 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G417800.1 | Wheat | cytosol | 51.76 | 17.09 |
| KRH64758 | Soybean | cytosol | 48.82 | 16.67 |
| KRH26369 | Soybean | cytosol | 52.35 | 15.81 |
| GSMUA_Achr9P01620_001 | Banana | cytosol | 40.59 | 15.75 |
| KRH44066 | Soybean | plastid | 52.35 | 15.72 |
| VIT_12s0034g02380.t01 | Wine grape | cytosol | 52.35 | 15.42 |
| VIT_18s0001g04340.t01 | Wine grape | cytosol, nucleus, plastid | 52.35 | 15.24 |
| HORVU3Hr1G082070.2 | Barley | cytosol | 52.35 | 15.16 |
| PGSC0003DMT400061157 | Potato | cytosol | 52.94 | 15.15 |
| KRH53150 | Soybean | cytosol, nucleus, peroxisome, plastid | 48.82 | 15.15 |
| TraesCS3D01G378700.1 | Wheat | cytosol | 51.76 | 15.09 |
| TraesCS3A01G385600.1 | Wheat | cytosol | 51.76 | 15.04 |
| Solyc01g104000.2.1 | Tomato | plastid | 52.35 | 14.98 |
| Zm00001d012247_P001 | Maize | cytosol | 51.18 | 14.87 |
| Os01t0874900-01 | Rice | extracellular | 52.35 | 14.83 |
| Zm00001d042661_P001 | Maize | cytosol | 51.18 | 14.8 |
| EES01843 | Sorghum | cytosol | 51.18 | 14.67 |
| GSMUA_Achr10P... | Banana | cytosol | 32.35 | 14.47 |
| Os05t0429000-01 | Rice | cytosol | 48.82 | 14.14 |
| CDX91734 | Canola | cytosol | 48.82 | 14.09 |
| AT1G36370.1 | Thale cress | plastid | 49.41 | 14.05 |
| Bra036774.1-P | Field mustard | cytosol | 48.24 | 13.9 |
| CDY41886 | Canola | cytosol | 48.24 | 13.9 |
| CDY38837 | Canola | cytosol | 45.88 | 13.85 |
| CDY41499 | Canola | cytosol | 46.47 | 13.84 |
| CDY30643 | Canola | cytosol | 47.06 | 13.82 |
| Bra031358.1-P | Field mustard | cytosol | 47.06 | 13.72 |
| Bra016392.1-P | Field mustard | cytosol | 46.47 | 13.67 |
| GSMUA_Achr6P17750_001 | Banana | cytosol | 45.88 | 13.64 |
| CDY04695 | Canola | cytosol | 46.47 | 13.46 |
| AT1G22020.1 | Thale cress | cytosol | 47.06 | 13.36 |
| GSMUA_Achr6P06520_001 | Banana | cytosol | 34.71 | 13.26 |
| GSMUA_Achr10P... | Banana | cytosol | 44.71 | 13.22 |
| GSMUA_Achr7P27360_001 | Banana | mitochondrion | 36.47 | 12.06 |
| GSMUA_Achr6P23140_001 | Banana | mitochondrion | 36.47 | 11.92 |
| GSMUA_Achr3P30760_001 | Banana | mitochondrion | 35.29 | 11.45 |
| GSMUA_Achr9P07310_001 | Banana | cytosol | 21.18 | 8.89 |
| GSMUA_Achr8P00310_001 | Banana | cytosol | 1.76 | 1.19 |
| KRH64759 | Soybean | cytosol, peroxisome | 0.59 | 0.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P16030_001 | EnsemblPlants:GSMUA_Achr10T16030_001 | EnsemblPlantsGene:GSMUA_Achr10G16030_001 | Gene3D:3.40.640.10 | GO:GO:0003674 | GO:GO:0003824 |
| InterPro:IPR015421 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_major | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF7 | PFAM:PF00464 |
| SUPFAM:SSF53383 | UniParc:UPI00029534D0 | UniProt:M0RIM8 | MapMan:35.1 | : | : |
Description
Putative Serine hydroxymethyltransferase 1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G16030_001]
Coordinates
chr10:+:23726455..23728045
Molecular Weight (calculated)
19099.0 Da
IEP (calculated)
4.269
GRAVY (calculated)
0.065
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKEMQFQVK GIELNTTLNF VCCIVLKTLV SHLIDEYSEA YPRYGYYGWD QCISQIEQLC SGRALMAFDL DLECWAVNVQ VYLCTLANFE VYIGSLFPKD
101: PIVELDFPSY GNVSHDYYMP NGKKILGASM FPQGLSYEVN LLIGSACTPP ESGNLMCACS QGRKSMCPCD
101: PIVELDFPSY GNVSHDYYMP NGKKILGASM FPQGLSYEVN LLIGSACTPP ESGNLMCACS QGRKSMCPCD
001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
Arabidopsis Description
SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.