Factsheet for Bra016392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41499	Canola	cytosol	96.89	98.07
Bra031358.1-P	Field mustard	cytosol	85.99	85.25
AT1G22020.1	Thale cress	cytosol	86.85	83.81
Bra036774.1-P	Field mustard	cytosol	70.59	69.15
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.38	68.66
TraesCS3B01G417800.1	Wheat	cytosol	60.9	68.35
KRH64759	Soybean	cytosol, peroxisome	12.11	67.31
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	63.49	66.97
GSMUA_Achr6P17750_001	Banana	cytosol	63.67	64.34
Zm00001d012247_P001	Maize	cytosol	64.01	63.25
Zm00001d042661_P001	Maize	cytosol	63.84	62.76
TraesCS3A01G385600.1	Wheat	cytosol	63.32	62.56
Os01t0874900-01	Rice	extracellular	64.88	62.5
TraesCS3D01G378700.1	Wheat	cytosol	62.98	62.44
EES01843	Sorghum	cytosol	64.01	62.39
Bra014001.1-P	Field mustard	cytosol	46.71	62.21
Os05t0429000-01	Rice	cytosol	63.15	62.18
HORVU3Hr1G082070.2	Barley	cytosol	62.98	62.01
Bra032749.1-P	Field mustard	cytosol	50.17	61.57
GSMUA_Achr10P...	Banana	cytosol	60.55	60.87
KRH64758	Soybean	cytosol	51.04	59.24
Bra011796.1-P	Field mustard	mitochondrion	42.56	47.58
Bra010622.1-P	Field mustard	mitochondrion	42.39	47.39
Bra016147.1-P	Field mustard	mitochondrion	42.73	47.23
Bra022129.1-P	Field mustard	cytosol	11.42	46.48
GSMUA_Achr10P...	Banana	vacuole	13.67	46.47
Bra040080.1-P	Field mustard	plastid	41.35	45.18
Bra003928.1-P	Field mustard	mitochondrion	42.04	21.83

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EnsemblPlantsGene:Bra016392	EnsemblPlants:Bra016392.1	EnsemblPlants:Bra016392.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264
GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4DIR5	HAMAP:MF_00051
PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI00025465D8	SEG:seg

Description

AT1G22020 (E=7e-258) SHM6 | SHM6 (serine hydroxymethyltransferase 6); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA08:-:18224189..18226131

Molecular Weight (calculated)

64428.7 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.414

Length

578 amino acids

Sequence
(BLAST)

001: MDRAQSDLSL GFGSSHALPL PPPRNPIADD SITLQLLEQR FDAPRSRTRA VVDKDENFED EDDDGDDQRE DFILLGQPMK LKRSRPSSST SSPTPCKRLA
101: IDSSLETRRA LVKAWGNEPL SEADPDLHEL MEKEKQRQFR GIELIASENF VCRAVMEALG SHLTNKYSEG MPGARYYTGN NYIDQIETLC QERALQAFGL
201: HHEQWGVNVQ PYSCTSANFA VFAGLLTPGE RIMGLDSPSG GHMSHGYYTP GGKKVSGASI FFESFPYKVD PRTGYIDYEK LEEKALDYRP KILICGGSSY
301: PRDWEFPRFR FIADKCGAVL MFDMAQISGL VAAKEAPNPF EYCDVVTSTT HKSLRGPRGG IIFYRRGFKA NKKQSINLNH CESNVQYDFE ERINFSVFPS
401: LQGGPHNNHI AALAIALKQA ASPEYKVYMR QVKKNAKALA SALISRKCKL VTGGTDNHLL LWDLTPLGLT GKVYEKVCEM CHITVNKVAI FSENGVISPG
501: GVRIGSPAMT SRGCLEQDFE TMAEFLYRAA QIASAALREH GKLQKEPLKS IYHCKDIADL RNQVEGFASK FAMPAFEI

Best Arabidopsis Sequence Match ( AT1G22020.2 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.