Factsheet for Bra016147.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96315	Canola	mitochondrion	96.56	98.25
CDX72795	Canola	mitochondrion	97.32	96.04
AT5G26780.3	Thale cress	mitochondrion	92.93	91.18
VIT_18s0001g07960.t01	Wine grape	mitochondrion	85.47	86.63
Solyc04g076790.2.1	Tomato	nucleus	84.32	85.3
PGSC0003DMT400016362	Potato	mitochondrion	84.51	85.16
KRH16896	Soybean	mitochondrion	82.03	84.62
KRH72501	Soybean	mitochondrion	82.98	84.44
Bra011796.1-P	Field mustard	mitochondrion	83.17	84.14
GSMUA_Achr7P27360_001	Banana	mitochondrion	82.6	84.05
Bra010622.1-P	Field mustard	mitochondrion	82.41	83.37
GSMUA_Achr6P23140_001	Banana	mitochondrion	82.41	82.88
GSMUA_Achr3P30760_001	Banana	mitochondrion	79.92	79.77
Bra032749.1-P	Field mustard	cytosol	51.82	57.54
Bra014001.1-P	Field mustard	cytosol	47.61	57.37
Bra040080.1-P	Field mustard	plastid	53.35	52.74
Zm00001d009738_P001	Maize	cytosol, plastid	20.08	48.39
Bra022129.1-P	Field mustard	cytosol	11.66	42.96
Bra031358.1-P	Field mustard	cytosol	47.8	42.88
Bra016392.1-P	Field mustard	cytosol	47.23	42.73
Bra003928.1-P	Field mustard	mitochondrion	89.1	41.87
Bra036774.1-P	Field mustard	cytosol	47.04	41.69

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EnsemblPlantsGene:Bra016147	EnsemblPlants:Bra016147.1	EnsemblPlants:Bra016147.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264
GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4DI20	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002541341
SEG:seg	:	:	:	:	:

Description

AT5G26780 (E=6e-259) SHM2 | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA07:-:19197503..19200853

Molecular Weight (calculated)

58206.0 Da

IEP (calculated)

9.222

GRAVY (calculated)

-0.330

Length

523 amino acids

Sequence
(BLAST)

001: MMALALRRLS SSLKKPIFFS NGRSMSSLPT SAMADSERSR SSWIKQLNAP LEEIDPEIAD IIELEKARQW KGFELIPSEN FTSASVMEAV GSVMTNKYSE
101: GYPGARYYGG NEYIDMAESL CQKRALEAFH LDPSKWGVNV QSLSGSPANF QVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI FFETMPYRLD
201: ESTGYIDYDQ LEKSAVLFRP KLIVAGASAY ARLYDYARIR KVCDKQKAVM LADMAHISGL VAAGVIPSPF EYADVVTTTT HKSLRGPRGA MIFFRKGLKE
301: VNKQGKEVMY DYEDRINASV FPGLQGGPHN HTITGLAVAL KQVKSPEYKA YQDQVLRNCS KFAETLLSKG YDLVSGGTDN HLVLVNLKNK GIDGSRVEKV
401: LESVHIAANK NTVPGDVSAM VPGGIRMGKA LKMNTERRTP ALTSRGFIEE DFAKVAEYFD LAVKIALKIK AESQGTKLKD FVATMQSNEK LQSEMAKLRE
501: MVEEYAKQFP TIGFEKETMR YKE

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.