Factsheet for GSMUA_Achr3P30760_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P27360_001	Banana	mitochondrion	90.65	92.41
GSMUA_Achr6P23140_001	Banana	mitochondrion	86.07	86.73
VIT_18s0001g07960.t01	Wine grape	mitochondrion	83.4	84.69
Os03t0738400-01	Rice	mitochondrion	82.63	84.41
OQU91027	Sorghum	mitochondrion	81.49	83.24
TraesCS4D01G068100.1	Wheat	mitochondrion	80.92	83.14
TraesCS4B01G069300.1	Wheat	mitochondrion	80.92	83.14
TraesCS4A01G246100.1	Wheat	mitochondrion	80.92	83.14
PGSC0003DMT400016362	Potato	mitochondrion	81.3	82.08
CDY49212	Canola	mitochondrion	79.58	81.93
KRH72501	Soybean	mitochondrion	80.34	81.91
KRH16896	Soybean	mitochondrion	79.2	81.85
Solyc04g076790.2.1	Tomato	nucleus	80.73	81.82
CDX96315	Canola	mitochondrion	79.96	81.52
Bra016147.1-P	Field mustard	mitochondrion	79.77	79.92
HORVU4Hr1G011500.1	Barley	plasma membrane	80.73	79.36
CDX72795	Canola	mitochondrion	80.15	79.25
AT5G26780.3	Thale cress	mitochondrion	80.15	78.8
GSMUA_Achr10P...	Banana	cytosol	46.76	64.47
GSMUA_Achr6P06520_001	Banana	cytosol	47.52	55.96
GSMUA_Achr9P01620_001	Banana	cytosol	45.61	54.57
GSMUA_Achr9P07310_001	Banana	cytosol	41.79	54.07
GSMUA_Achr8P00310_001	Banana	cytosol	25.95	53.97
Zm00001d009738_P001	Maize	cytosol, plastid	17.94	43.32
GSMUA_Achr6P17750_001	Banana	cytosol	44.27	40.56
GSMUA_Achr10P...	Banana	cytosol	43.51	39.65
Bra003928.1-P	Field mustard	mitochondrion	76.53	36.03
CDX68316	Canola	mitochondrion	80.15	35.9
GSMUA_Achr10P...	Banana	vacuole	11.45	35.29

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	EnsemblPlantsGene:GSMUA_Achr3G30760_001	EnsemblPlants:GSMUA_Achr3P30760_001
EnsemblPlants:GSMUA_Achr3T30760_001	InterPro:IPR015421	InterPro:IPR015422	UniProt:M0SJ90	HAMAP:MF_00051	PFAM:PF00464
PIRSF:PIRSF000412	PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	UniParc:UPI00029693D5	SEG:seg	:	:

Description

Serine hydroxymethyltransferase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G30760_001]

Coordinates

chr3:-:29371519..29377186

Molecular Weight (calculated)

58049.9 Da

IEP (calculated)

9.204

GRAVY (calculated)

-0.246

Length

524 amino acids

Sequence
(BLAST)

001: MAMASALRRL SSSSAKTQPF LRSSLYYMSS LRSEAVYEKE KSRVTSSFLS FIWPKQLNAP SEVVDPEIAD IVELEKARQW KGLELIPSKN FTSMSVMQAV
101: GSIMSLKNSE GCPGARYYRG NEYMDMAESL CQKRALEAFR LDPAKWGVNV QSLSGSLANF QVYTALLKPH ERIMALDLPH GGHLSHGYQT DTKKISAVSI
201: FFETMPYRLN ESTGYIDYDQ LEKSATLFRP KLIVAGASAY ARLYDYARIR KVCDKHKAIL LADMAHTSGL VSAGVIPSPF EYADVVTTTT HKSLRGPCGA
301: MIFFRKGVKE INKQGKEVMH DFEEKINAAV FPGLQGGPHN HIITGLAVAL KQATTPEYKA YQEQVLSNCA KFAQCLVEKG YELVSGGTEN HLVLVNLKNK
401: GIDGSRVEKV LELVHIAANK NTVPGDVSAM VPGGIRMGTP ALTSRGFVEE DFAKVADFFD TAVKLALKIK SETKEGSKLK DFLATIQTNA NIQSEIAKLR
501: HEVEEYAKQF PTIGFDKETM KHRN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.