Factsheet for VIT_18s0001g07960.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00120.t01	Wine grape	mitochondrion	90.5	90.15
KRH16896	Soybean	mitochondrion	87.02	88.56
CDY49212	Canola	mitochondrion	86.82	88.02
GSMUA_Achr7P27360_001	Banana	mitochondrion	87.4	87.74
VIT_00s0211g00070.t01	Wine grape	mitochondrion	87.6	87.26
Solyc04g076790.2.1	Tomato	nucleus	87.4	87.23
CDX96315	Canola	mitochondrion	86.82	87.16
KRH72501	Soybean	mitochondrion	86.82	87.16
PGSC0003DMT400016362	Potato	mitochondrion	87.4	86.9
VIT_00s0211g00090.t01	Wine grape	cytosol	43.6	86.54
GSMUA_Achr6P23140_001	Banana	mitochondrion	86.82	86.15
OQU91027	Sorghum	mitochondrion	85.27	85.77
Os03t0738400-01	Rice	mitochondrion	85.08	85.58
Bra016147.1-P	Field mustard	mitochondrion	86.63	85.47
TraesCS4D01G068100.1	Wheat	mitochondrion	84.11	85.1
TraesCS4B01G069300.1	Wheat	mitochondrion	84.11	85.1
TraesCS4A01G246100.1	Wheat	mitochondrion	84.11	85.1
AT5G26780.3	Thale cress	mitochondrion	87.6	84.8
CDX72795	Canola	mitochondrion	87.02	84.72
VIT_00s0211g00100.t01	Wine grape	mitochondrion	40.5	84.27
GSMUA_Achr3P30760_001	Banana	mitochondrion	84.69	83.4
VIT_00s0211g00160.t01	Wine grape	mitochondrion	37.79	82.63
HORVU4Hr1G011500.1	Barley	plasma membrane	84.3	81.61
VIT_00s0211g00080.t01	Wine grape	cytosol	21.71	61.54
VIT_05s0029g00310.t01	Wine grape	cytosol	53.49	58.6
VIT_04s0008g00770.t01	Wine grape	plastid	56.01	54.73
VIT_12s0034g02380.t01	Wine grape	cytosol	49.22	44.02
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	48.06	42.47
CDX68316	Canola	mitochondrion	87.02	38.38
Bra003928.1-P	Field mustard	mitochondrion	82.36	38.19

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100245411	wikigene:100245411	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	ProteinID:CCB45683	ProteinID:CCB45683.1
ncoils:Coil	UniProt:F6GZK4	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421
InterPro:IPR015422	EntrezGene:LOC100245411	wikigene:LOC100245411	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412
ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF12	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	TIGR:TC60143	UniParc:UPI00015C769B	ArrayExpress:VIT_18s0001g07960
EnsemblPlantsGene:VIT_18s0001g07960	EnsemblPlants:VIT_18s0001g07960.t01	unigene:Vvi.14975	RefSeq:XP_002285605	RefSeq:XP_002285605.1	RefSeq:XP_010664446.1

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:F6GZK4]

Coordinates

chr18:+:6430717..6438835

Molecular Weight (calculated)

56894.5 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.258

Length

516 amino acids

Sequence
(BLAST)

001: MAMALRGLAS SVKKPIGPLI NGGSLYYMSS LPNEVVCEKE KSRITWTKQL NAPLEVVDPE IADIIELEKA RQWKGLELIP SENFTSVSVM QAVGSVMTNK
101: YSEGYPGARY YGGNEYIDMA ESLCQKRALE AFQLDPAKWG VNVQSLSGSP ANFQAYTALL KPHERIMALD LPHGGHLSHG YQTDTKKISA VSIFFETMPY
201: RLDEKTGYID YDQLEKSAAL FRPKLIVAGA SAYARLYDYA RIRKVCDKQK AVMLADMAHI SGLVAAGVIQ SPFEYADIVT TTTHKSLRGP RGAMIFFRKG
301: VKEINKQGKE VLYDYEDKIN QAVFPGLQGG PHNHTISGLA VALKQAMTPE YKAYQEQVLT NCSTFAQSLL EKGYELVSGG TDNHLVLVNL KNKGIDGSRV
401: EKVLESVHIA ANKNTVPGDV SAMVPGGIRM GTPALTSRGF VEEDFVKVAE LFDAAVKLAL KIKANSKGTK LKDFVATMQS DAETQSEIAK LRHEVEEYAK
501: QFPTIGFEKE TMKYKD

Best Arabidopsis Sequence Match ( AT5G26780.1 )
(BLAST)

001: MALALRRLSS SVKKPISLLS SNGGSLRFMS SLSTAAMAES EKSRSSWIKQ LNASLDEIDP EVADIIELEK ARQWKGFELI PSENFTSLSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFQLDPSKW GVNVQSLSGS PANFQVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDENTGYI DYDQLEKSAV LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAAGVI PSPFEYADVV TTTTHKSLRG PRGAMIFFRK
301: GLKEINKQGK EVMYDYEDRI NQAVFPGLQG GPHNHTITGL AVALKQARTP EYKAYQDQVL RNCSKFAETL LAKGYDLVSG GTDNHLVLVN LKNKGIDGSR
401: VEKVLELVHI AANKNTVPGD VSAMVPGGIR MGTPALTSRG FIEEDFAKVA EYFDLAVKIA LKIKAESQGT KLKDFVATMQ SNEKLQSEMS KLREMVEEYA
501: KQFPTIGFEK ETMRYKE

Arabidopsis Description

SHM2serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.