Factsheet for VIT_00s0211g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00160.t01	Wine grape	mitochondrion	84.68	88.98
VIT_00s0211g00070.t01	Wine grape	mitochondrion	95.56	45.75
VIT_00s0211g00120.t01	Wine grape	mitochondrion	92.74	44.4
VIT_18s0001g07960.t01	Wine grape	mitochondrion	84.27	40.5
Os03t0738400-01	Rice	mitochondrion	80.24	38.79
TraesCS4A01G246100.1	Wheat	mitochondrion	78.23	38.04
TraesCS4B01G069300.1	Wheat	mitochondrion	78.23	38.04
TraesCS4D01G068100.1	Wheat	mitochondrion	78.23	38.04
OQU91027	Sorghum	mitochondrion	78.63	38.01
HORVU4Hr1G011500.1	Barley	plasma membrane	78.23	36.4
VIT_04s0008g00770.t01	Wine grape	plastid	57.26	26.89
VIT_05s0029g00310.t01	Wine grape	cytosol	49.6	26.11
VIT_12s0034g02380.t01	Wine grape	cytosol	47.18	20.28
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	47.58	20.21
VIT_00s0211g00080.t01	Wine grape	cytosol	5.65	7.69
VIT_00s0211g00090.t01	Wine grape	cytosol	0.81	0.77

Protein Annotations

ArrayExpress:VIT_00s0211g00100	EMBL:FN595522	EnsemblPlants:VIT_00s0211g00100.t01	EnsemblPlantsGene:VIT_00s0211g00100	Gene3D:3.40.640.10	Gene3D:3.90.1150.10
GO:GO:0003674	GO:GO:0003824	InterPro:IPR015421	InterPro:IPR015422	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	PANTHER:PTHR11680	PANTHER:PTHR11680:SF29	PFAM:PF00464	ProteinID:CBI25702	ProteinID:CBI25702.3
SUPFAM:SSF53383	UniParc:UPI0001BE2C51	UniProt:D7T5B9	MapMan:50.2.1	:	:

Description

No Description!

Coordinates

chrUn:-:12921201..12930742

Molecular Weight (calculated)

27578.1 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.141

Length

248 amino acids

Sequence
(BLAST)

001: MAMAMALWRL SSSVNKPVRS VFNGGSIYYM ASLPNEAVYE EEKSRVTWPK QLNAPLGVVD PEIADIIELE KARQWKALEL VPSENFTSVS VMQAVGSIMT
101: NNVSEGYPGA RYYGGNEYID MAESLCQKRA LEAFRLDPAK WGVNVQSLSG SPANFQVYTA LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLNESTGY IDYDQLEKSA TLFRPKLIVA GASAYALQVT FLKYLTGL

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.