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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 mitochondrion: 21043471
plastid: 22160430
mitochondrion: 23895732
golgi: 25769308
unclear: 25769308
mitochondrion: 26136264
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID: 21043471 doi
RP Jacoby, AH Millar, NL Taylor
ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.
msms PMID: 23895732 doi
RP Jacoby, AH Millar, NL Taylor
ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.
msms PMID: 26136264 doi
S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma
College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS5A01G246000.3
TraesCS5B01G243400.1
TraesCS5D01G252600.2
TraesCS7A01G282200.4
TraesCS7B01G179000.2
TraesCS7D01G280800.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G37930.1 TraesCS5A01G246000.3 AT4G24560.1 23232097
AT4G37930.1 TraesCS5B01G243400.1 AT4G24560.1 23232097
AT4G37930.1 TraesCS5D01G252600.2 AT4G24560.1 23232097
AT4G37930.1 TraesCS7A01G282200.4 AT4G24560.1 23232097
AT4G37930.1 TraesCS7B01G179000.2 AT4G24560.1 23232097
AT4G37930.1 TraesCS7D01G280800.4 AT4G24560.1 23232097
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G069300.1 Wheat mitochondrion 100.0 100.0
TraesCS4A01G246100.1 Wheat mitochondrion 100.0 100.0
HORVU4Hr1G011500.1 Barley plasma membrane 99.8 95.5
Os03t0738400-01 Rice mitochondrion 93.73 93.18
OQU91027 Sorghum mitochondrion 92.16 91.62
CDX90395 Canola cytosol 60.39 88.0
CDX69344 Canola mitochondrion 87.84 86.65
CDX75685 Canola mitochondrion 87.65 86.46
Bra011796.1-P Field mustard mitochondrion 87.45 86.27
AT4G37930.1 Thale cress mitochondrion 87.25 86.07
CDY49684 Canola mitochondrion 87.06 85.88
PGSC0003DMT400078666 Potato mitochondrion 87.06 85.71
Solyc02g091560.2.1 Tomato plastid 86.86 85.52
Bra010622.1-P Field mustard mitochondrion 86.67 85.49
GSMUA_Achr7P27360_001 Banana mitochondrion 85.69 85.02
KRG99502 Soybean mitochondrion 86.27 84.94
PGSC0003DMT400016362 Potato mitochondrion 86.08 84.59
KRH45493 Soybean mitochondrion 85.69 84.36
VIT_18s0001g07960.t01 Wine grape mitochondrion 85.1 84.11
Solyc04g076790.2.1 Tomato nucleus 85.1 83.95
GSMUA_Achr6P23140_001 Banana mitochondrion 85.49 83.85
VIT_00s0211g00120.t01 Wine grape mitochondrion 85.1 83.78
KRH16896 Soybean mitochondrion 81.96 82.45
KRH72501 Soybean mitochondrion 82.94 82.3
VIT_00s0211g00090.t01 Wine grape cytosol 41.57 81.54
VIT_00s0211g00070.t01 Wine grape mitochondrion 82.35 81.08
GSMUA_Achr3P30760_001 Banana mitochondrion 83.14 80.92
KRH39500 Soybean mitochondrion 80.39 79.3
VIT_00s0211g00100.t01 Wine grape mitochondrion 38.04 78.23
TraesCS2D01G493600.1 Wheat cytosol 52.94 57.32
TraesCS1D01G220400.1 Wheat golgi 54.71 52.35
Zm00001d009738_P001 Maize cytosol, plastid 20.78 48.85
TraesCS3D01G378700.1 Wheat cytosol 49.8 43.57
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003824
GO:GO:0004372GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005840GO:GO:0005886
GO:GO:0006544GO:GO:0006563GO:GO:0006950GO:GO:0007623GO:GO:0008150GO:GO:0008152
GO:GO:0008266GO:GO:0009058GO:GO:0009409GO:GO:0009416GO:GO:0009507GO:GO:0009534
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009853GO:GO:0009987
GO:GO:0010319GO:GO:0016020GO:GO:0016740GO:GO:0019264GO:GO:0022626GO:GO:0030170
GO:GO:0035999GO:GO:0046686GO:GO:0048046InterPro:IPR015421InterPro:IPR015422HAMAP:MF_00051
PFAM:PF00464PIRSF:PIRSF000412ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF12InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSEnsemblPlantsGene:TraesCS4D01G068100
EnsemblPlants:TraesCS4D01G068100.1TIGR:cd00378SEG:seg:::
Description
No Description!
Coordinates
chr4D:+:43300207..43304637
Molecular Weight (calculated)
56125.3 Da
IEP (calculated)
8.498
GRAVY (calculated)
-0.275
Length
510 amino acids
Sequence
(BLAST)
001: MAMATALRKL SARGQPLSRL TPLYSMASLP ATEERSAVTW PKQLNAPLEE VDPEIADIIE LEKARQWKGL ELIPSENFTS LSVMQAVGSV MTNKYSEGYP
101: GARYYGGNEY IDMAETLCQK RALEAFNLDP EKWGVNVQPL SGSPANFHVY TALLKPHDRI MALDLPHGGH LSHGYQTDTK KISAVSIFFE TMPYRLDEST
201: GLIDYDQLEK SAVLFRPKLI VAGASAYARL YDYNRMRKIC DKQKAVLLAD MAHISGLVAA GVIPSPFEYA DVVTTTTHKS LRGPRGAMIF FRKGVKEINK
301: QGKEVKYDFE DKINAAVFPG LQGGPHNHTI TGLAVALKQA TTQEYRAYQE QVMSNSARFA ESLTSKGYDI VSGGTDNHLV LVNLKKKGID GSRVEKVLEN
401: VHIAANKNTV PGDVSAMVPG GIRMGTPALT SRGFVEEDFA KVADFFDSAV NLALKVKAAA AGTKLKDFVA TLQSDSNIQA EIAKLRHDVE EYAKQFPTIG
501: FEKETMKYKN
Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)
001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN
Arabidopsis Description
SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.