Factsheet for TraesCS1D01G220400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G055860.2	Barley	plasma membrane	87.24	98.73
TraesCS1A01G218700.1	Wheat	golgi	99.06	98.69
TraesCS1B01G232200.2	Wheat	plastid	97.56	97.56
Os12t0409000-01	Rice	plasma membrane	85.37	85.69
TraesCS2D01G493600.1	Wheat	cytosol	74.11	83.86
EES16245	Sorghum	plastid	84.99	82.97
Zm00001d030859_P001	Maize	plastid	82.93	70.27
TraesCS4D01G068100.1	Wheat	mitochondrion	52.35	54.71
TraesCS3D01G378700.1	Wheat	cytosol	57.41	52.49

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:TraesCS1D01G220400
EnsemblPlants:TraesCS1D01G220400.1	TIGR:cd00378	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:308179449..308182749

Molecular Weight (calculated)

58026.4 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.241

Length

533 amino acids

Sequence
(BLAST)

001: MAMAAPHVSH SQPPAGRAAL FAHPTTAQNS SPLRLPLGRA AVRPVRLYAV STDAAPATAA AAMDAVADWG LTPLAEADPE VYDLIEREKR RQRTGIELIA
101: SENFTSLAVM EALGSPLTNK YSEGMPGARY YGGNEVIDEV EELCRARALK AFHLDPASWG VNVQPYSGSP ANFAAYTGLL QPHERIMGLD LPSGGHLTHG
201: YYTAGGKKIS ATSIYFSSLP YKVSSDTGYV DYDRLEEKAM DFRPKLIICG GSAYPRDWDY ARLRAIADKC GAMLLCDMAH ISGLVAAQEA TNPFEYSDVV
301: TTTTHKSLRG PRSGMIFYRK GPKPPKKGQP EGALYDYEDK INFAVFPSLQ GGPHNHQIAA LAVGLKQAMS PGFKAYIQQV KANAVALGNH LMSKGYKMVT
401: DGTENHLVLW DLRPLGLSGN KVEKVCDLSS ITLNKNAVFG DSSALAPGGV RIGTPAMTSR GLVEKDFVKI AEYLHQAVVI CLNVQKQRGK RYNDFIVDLE
501: KNEDIAELRA EVEKFAIAFE MPGFRVSDMK YKD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.