Factsheet for TraesCS1A01G218700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G220400.1	Wheat	golgi	98.69	99.06
HORVU1Hr1G055860.2	Barley	plasma membrane	86.92	98.73
TraesCS1B01G232200.2	Wheat	plastid	97.2	97.56
Os12t0409000-01	Rice	plasma membrane	85.05	85.69
TraesCS2A01G493700.1	Wheat	plastid	74.02	84.08
EES16245	Sorghum	plastid	84.67	82.97
Zm00001d030859_P001	Maize	plastid	82.62	70.27
TraesCS4A01G246100.1	Wheat	mitochondrion	52.15	54.71
TraesCS3A01G385600.1	Wheat	cytosol	57.38	52.48

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	EnsemblPlantsGene:TraesCS1A01G218700
EnsemblPlants:TraesCS1A01G218700.1	TIGR:cd00378	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1A:+:387359978..387363409

Molecular Weight (calculated)

58231.8 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.220

Length

535 amino acids

Sequence
(BLAST)

001: MAMAAPHVSH SQPPVGRAAL FAHPTTAQSS SPLRLPLHRA AVRPVRLYAV STDAAPAPAT AAAAMDAVAD WGLTPLAEAD PEVYDLIERE KRRQRTGIEL
101: IASENFTSLA VMEALGSPLT NKYSEGMPGA RYYGGNEVID EVEELCRARA LKAFHLDPAS WGVNVQPYSG SPANFAAYTG LLQPHERIMG LDLPSGGHLT
201: HGYYTAGGKK ISATSIYFSS LPYKVSSDTG YVDYDRLEEK AMDFRPKLII CGGSAYPRDW DYARLRAIAD KCGAMLLCDM AHISGLVAAQ EATNPFEYSD
301: VVTTTTHKSL RGPRSGMIFY RKGPKPPKKG QPEGALYDYE DKINFAVFPS LQGGPHNHQI AALAVGLKQA MSPGFKAYIQ QVKANAVALG NHLMSKGYKM
401: VTDGTENHLV LWDLRPLGLS GNKVEKVCDL SSITLNKNAV FGDSSALAPG GVRIGTPAMT SRGLVEKDFV KIAEYLHQAV VICLNVQKQR GKRYNDFIVD
501: LEKNKDIAEL RAEVEKFAIA FEMPGFLVSD MKYKD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.