Factsheet for Zm00001d030859_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16245	Sorghum	plastid	79.33	91.39
HORVU1Hr1G055860.2	Barley	plasma membrane	65.98	88.11
Zm00001d040457_P001	Maize	mitochondrion	12.88	83.51
TraesCS1B01G232200.2	Wheat	plastid	70.43	83.11
Os12t0409000-01	Rice	plasma membrane	70.11	83.05
TraesCS1D01G220400.1	Wheat	golgi	70.27	82.93
TraesCS1A01G218700.1	Wheat	golgi	70.27	82.62
Zm00001d049234_P001	Maize	plastid	65.34	78.14
Zm00001d012247_P001	Maize	cytosol	47.69	51.28
Zm00001d042661_P001	Maize	cytosol	47.85	51.19
Zm00001d009738_P001	Maize	cytosol, plastid	13.51	39.17

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	Gene3D:1.10.287.980
MapMan:1.3.5	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	UniProt:A0A1D6KEN9	InterPro:Cyt_b/b6_C
InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b6/f_cplx_suIV	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009055	GO:GO:0009058	GO:GO:0009579
GO:GO:0009767	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	GO:GO:0042651
GO:GO:0045156	InterPro:IPR005798	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	ProteinID:ONM01611.1
PFAM:PF00032	PFAM:PF00464	ScanProsite:PS00096	PFscan:PS51003	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	SUPFAM:SSF81648	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	TIGRFAMs:TIGR01156	TMHMM:TMhelix	UniParc:UPI000844D0D8	EnsemblPlantsGene:Zm00001d030859	EnsemblPlants:Zm00001d030859_P001
EnsemblPlants:Zm00001d030859_T001	SEG:seg	:	:	:	:

Description

Serine hydroxymethyltransferase

Coordinates

chr1:+:163875186..163880577

Molecular Weight (calculated)

68731.9 Da

IEP (calculated)

7.823

GRAVY (calculated)

-0.041

Length

629 amino acids

Sequence
(BLAST)

001: MASHHLASPA AAATSAATVS RALFKHAYTK PSYSLLHAPL LRAVAARPAL LSAATAVSTT AAPAAAAMDN VEEWGLRPLA EVDPEVYDLI EREKRRQRAG
101: IELIASENFT SLAVMEALGS PLTNKYSEGM PGARYYGGNE VIDEIEELCR TRALAAFHLD PARWGVNVQP YSGSPANFAA YTGLLQPNDR IMGLDLPSGG
201: HLTHGYYTAS GKKISATSIY FQSLPYKVSS DTGYVDYDKL EEKAMDFRPK LIICGGSACP REWDYARFRA IADKCGAMLL CDMAHISGLV AAQEALDPFE
301: FSDVVTTTTH KSLRGPRSGM IFYRKGPKPP KKGQPEGALY DYEDKINFAV FPSLQGGPHN HQIAALAVAL KQAMSPGFKA YIQQVKANTV SLGNHLMSKG
401: YKLVTDGTEN HLVLWDLRPL GLTGNKVEML CDLCNITLNK NAVFGDSSAL SPGGVRIGLA VLERSLIGEP ADLFATPLEI LPEWYFFPVF QILRTVPNKL
501: LGVLSMVSVP TGLLTVPFLE NVNKFQNPFR RPVATIFFLI GTAIALWLGT PAMTSRGLVE KDFVQIAEYL HRAVTICLSI QAEHGKILKD FKKGLVQNKD
601: IENLRAEVEK FATSFDMPGF RVSDMKYTD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.