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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 29575040 doi
WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d020769_P005
Zm00001d050489_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G13930.1 Zm00001d020769_P005 AT4G24560.1 23232097
AT4G13930.1 Zm00001d050489_P001 AT4G24560.1 23232097
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES08452 Sorghum cytosol 87.07 97.24
Os11t0455800-01 Rice plasma membrane 85.36 95.33
Zm00001d040457_P001 Maize mitochondrion 17.49 94.85
TraesCS2A01G493700.1 Wheat plastid 83.27 92.99
TraesCS2D01G493600.1 Wheat cytosol 83.27 92.99
TraesCS2B01G521700.1 Wheat cytosol 83.08 92.78
GSMUA_Achr8P00310_001 Banana cytosol 42.59 88.89
GSMUA_Achr6P06520_001 Banana cytosol 73.95 87.42
VIT_05s0029g00310.t01 Wine grape cytosol 77.76 86.84
GSMUA_Achr9P01620_001 Banana cytosol 71.86 86.3
AT4G13930.1 Thale cress cytosol 77.0 85.99
Bra032749.1-P Field mustard cytosol 76.81 85.77
Solyc05g053810.2.1 Tomato nucleus, plastid 76.81 85.77
GSMUA_Achr9P07310_001 Banana cytosol 65.97 85.68
CDY69223 Canola cytosol 76.62 85.56
PGSC0003DMT400011868 Potato cytosol 76.43 85.35
PGSC0003DMT400040717 Potato cytosol 76.43 85.35
CDY50421 Canola cytosol 70.15 85.02
CDY01173 Canola cytosol 70.15 85.02
Solyc12g098490.1.1 Tomato extracellular, nucleus, unclear 75.86 84.71
CDY47310 Canola cytosol 69.77 84.56
Bra014001.1-P Field mustard cytosol 69.77 84.56
KRH58850 Soybean cytosol 75.29 82.67
HORVU2Hr1G110110.2 Barley mitochondrion, plastid 85.93 82.03
AT4G13890.1 Thale cress cytosol 68.44 76.6
KRH42751 Soybean endoplasmic reticulum, nucleus 78.52 72.2
Zm00001d030859_P001 Maize plastid 78.14 65.34
Zm00001d012247_P001 Maize cytosol 55.13 49.57
Zm00001d042661_P001 Maize cytosol 54.75 48.98
Zm00001d009738_P001 Maize cytosol, plastid 15.59 37.79
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10MapMan:4.1.4.3.1ProteinID:AQK49905.1GO:GO:0003674GO:GO:0003824
GO:GO:0004372GO:GO:0005488GO:GO:0006545GO:GO:0006730GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0019264GO:GO:0030170GO:GO:0035999
InterPro:IPR015421InterPro:IPR015422UniProt:K7TSD2HAMAP:MF_00051PFAM:PF00464PIRSF:PIRSF000412
ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF11InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniParc:UPI0000F6CACEEnsemblPlantsGene:Zm00001d049234EnsemblPlants:Zm00001d049234_P001
EnsemblPlants:Zm00001d049234_T001SEG:seg::::
Description
glycine1 glycine1
Coordinates
chr4:-:22022728..22027004
Molecular Weight (calculated)
57464.0 Da
IEP (calculated)
8.754
GRAVY (calculated)
-0.251
Length
526 amino acids
Sequence
(BLAST)
001: MCTRAHLPST TAIYPGAPSS LPRPSLRLRL RPRPRPRPLL AATTPVTSSR ADAAAMDPVA TWGLTPLAGA DPEIYDLLER EKRRQRRGIE LIASENFTSF
101: AVMEALGSAL TNKYSEGMPG ARYYGGNDVI DEIENLCRSR ALAAFHLDAA SWGVNVQPYS GSPANFAAYT ALLNPHDRIM GLDLPSGGHL THGYYTAGGK
201: KISATSIYFE SLPYKVSAAT GYIDYEKLEE KALDFRPKLI ICGGSAYPRD WDYAKLRAVA DKVGALLLCD MAHISGLVAA QEAANPFEYC DVVTTTTHKS
301: LRGPRAGMIF YRKGPKPPKK GQPEGAVYDY EDKINFAVFP SLQGGPHNHQ IAALAVALQQ TMSPGFKAYA KQVKANAVAI GNYLMSKGYK MVTDGTENHL
401: VLWDLRPLGL TGNKVEKLCD LCHITLNKNA VFGDSSALSP GGVRIGAPAM TSRGLLEKDF EQIGEFLHQA VTICLNIQKE YGKLLKDFNK GLVNNKDIEN
501: LKVQVEKFAD SFDMPGFTLE SMKYKE
Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)
001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
Arabidopsis Description
SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.