Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G13930.1 | Thale cress | cytosol | 81.49 | 81.32 |
| Zm00001d040457_P001 | Maize | mitochondrion | 16.6 | 80.41 |
| VIT_05s0029g00310.t01 | Wine grape | cytosol | 79.15 | 78.98 |
| Solyc05g053810.2.1 | Tomato | nucleus, plastid | 79.15 | 78.98 |
| PGSC0003DMT400040717 | Potato | cytosol | 79.15 | 78.98 |
| Solyc12g098490.1.1 | Tomato | extracellular, nucleus, unclear | 77.87 | 77.71 |
| PGSC0003DMT400011868 | Potato | cytosol | 77.87 | 77.71 |
| GSMUA_Achr6P06520_001 | Banana | cytosol | 72.98 | 77.08 |
| GSMUA_Achr9P01620_001 | Banana | cytosol | 71.49 | 76.71 |
| EES08452 | Sorghum | cytosol | 76.17 | 76.01 |
| KRH58850 | Soybean | cytosol | 77.23 | 75.78 |
| TraesCS2A01G493700.1 | Wheat | plastid | 75.53 | 75.37 |
| Os11t0455800-01 | Rice | plasma membrane | 75.53 | 75.37 |
| TraesCS2D01G493600.1 | Wheat | cytosol | 75.53 | 75.37 |
| GSMUA_Achr9P07310_001 | Banana | cytosol | 64.89 | 75.31 |
| TraesCS2B01G521700.1 | Wheat | cytosol | 75.32 | 75.16 |
| GSMUA_Achr8P00310_001 | Banana | cytosol | 40.21 | 75.0 |
| Zm00001d049234_P001 | Maize | plastid | 76.6 | 68.44 |
| KRH42751 | Soybean | endoplasmic reticulum, nucleus | 78.51 | 64.51 |
| HORVU2Hr1G110110.2 | Barley | mitochondrion, plastid | 74.89 | 63.88 |
| AT4G37930.1 | Thale cress | mitochondrion | 55.96 | 50.87 |
| AT4G32520.1 | Thale cress | plastid | 54.89 | 48.77 |
| AT5G26780.3 | Thale cress | mitochondrion | 54.68 | 48.22 |
| AT1G36370.1 | Thale cress | plastid | 59.57 | 46.82 |
| AT1G22020.1 | Thale cress | cytosol | 58.94 | 46.24 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
| Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | MapMan:4.1.4.3.1 | EntrezGene:827024 | ProteinID:AEE83342.1 | ArrayExpress:AT4G13890 |
| EnsemblPlantsGene:AT4G13890 | RefSeq:AT4G13890 | TAIR:AT4G13890 | RefSeq:AT4G13890-TAIR-G | EnsemblPlants:AT4G13890.1 | TAIR:AT4G13890.1 |
| Unigene:At.33326 | ProteinID:CAB36853.1 | ProteinID:CAB78431.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006545 |
| GO:GO:0006730 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009555 |
| GO:GO:0009987 | GO:GO:0010197 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030154 |
| GO:GO:0030170 | GO:GO:0035999 | InterPro:IPR015421 | InterPro:IPR015422 | HAMAP:MF_00051 | RefSeq:NP_193125.1 |
| PFAM:PF00464 | PIRSF:PIRSF000412 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF11 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major |
| UniProt:Q9SVM4 | Symbol:SHM5 | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS | UniParc:UPI00000A1533 |
Description
SHM5Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4]
Coordinates
chr4:-:8031972..8033731
Molecular Weight (calculated)
52264.1 Da
IEP (calculated)
5.824
GRAVY (calculated)
-0.310
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPVYSWGNT HLDFVDPEIY DLIEKEKHRQ CRGIELIAAE NFTSVAVMEA LGSCLTNKYS EGMPGNRYYG GTEFIDEIES LCRSRSLEAF HCNPEKWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHITHGYY SSGGKNISAT SIYFENLPYK VDSKTGYIDY DKLEEKAMDF RPKLIICGGT SYPREWDYAR
201: FRAVADKVGA FLLCDMAHNS ALVAAQEAAD PFEYCDVVTT STHKSLRGPR AGMIFYRKGP KPAKKGQPEG EVYDFDAKIN SAVFPALQSG PHNNKIGALA
301: VALKQVMAPS FKVYAKQVKA NAACLASYLI NKGYTLVTDG TDNHLILWDL RPLGLTGNKV EKVCELCYIT LNRNAVFGDT SFLAPGGVRI GTPAMTSRGL
401: VEKDFEKIGE FLHRAVTITL DIQEQYGKVM KDFNKGLVNN KEIDEIKADV EEFTYDFDMP GFFISESRND
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHITHGYY SSGGKNISAT SIYFENLPYK VDSKTGYIDY DKLEEKAMDF RPKLIICGGT SYPREWDYAR
201: FRAVADKVGA FLLCDMAHNS ALVAAQEAAD PFEYCDVVTT STHKSLRGPR AGMIFYRKGP KPAKKGQPEG EVYDFDAKIN SAVFPALQSG PHNNKIGALA
301: VALKQVMAPS FKVYAKQVKA NAACLASYLI NKGYTLVTDG TDNHLILWDL RPLGLTGNKV EKVCELCYIT LNRNAVFGDT SFLAPGGVRI GTPAMTSRGL
401: VEKDFEKIGE FLHRAVTITL DIQEQYGKVM KDFNKGLVNN KEIDEIKADV EEFTYDFDMP GFFISESRND
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.