CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16837
KRH52893
KRH62182
KRH72452

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G13930.1	KRH16837	AT4G24560.1	23232097
AT4G13930.1	KRH52893	AT4G24560.1	23232097
AT4G13930.1	KRH62182	AT4G24560.1	23232097
AT4G13930.1	KRH72452	AT4G24560.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053810.2.1	Tomato	nucleus, plastid	89.56	91.08
VIT_05s0029g00310.t01	Wine grape	cytosol	89.35	90.87
PGSC0003DMT400040717	Potato	cytosol	88.94	90.45
CDY69223	Canola	cytosol	87.68	89.17
Bra032749.1-P	Field mustard	cytosol	87.47	88.96
PGSC0003DMT400011868	Potato	cytosol	87.06	88.53
CDY01173	Canola	cytosol	80.17	88.48
CDY50421	Canola	cytosol	80.17	88.48
Solyc12g098490.1.1	Tomato	extracellular, nucleus, unclear	86.85	88.32
Bra014001.1-P	Field mustard	cytosol	79.96	88.25
CDY47310	Canola	cytosol	79.96	88.25
AT4G13930.1	Thale cress	cytosol	86.43	87.9
GSMUA_Achr9P01620_001	Banana	cytosol	79.33	86.76
GSMUA_Achr6P06520_001	Banana	cytosol	79.96	86.07
Zm00001d040457_P001	Maize	mitochondrion	17.33	85.57
GSMUA_Achr9P07310_001	Banana	cytosol	71.82	84.94
GSMUA_Achr8P00310_001	Banana	cytosol	44.68	84.92
EES08452	Sorghum	cytosol	82.46	83.86
Os11t0455800-01	Rice	plasma membrane	81.42	82.8
TraesCS2D01G493600.1	Wheat	cytosol	80.58	81.95
TraesCS2A01G493700.1	Wheat	plastid	80.58	81.95
TraesCS2B01G521700.1	Wheat	cytosol	80.38	81.74
KRH42751	Soybean	endoplasmic reticulum, nucleus	95.62	80.07
AT4G13890.1	Thale cress	cytosol	75.78	77.23
Zm00001d049234_P001	Maize	plastid	82.67	75.29
HORVU2Hr1G110110.2	Barley	mitochondrion, plastid	80.58	70.05
KRH11116	Soybean	cytosol	27.77	54.51
KRH26204	Soybean	cytosol	22.34	53.77
KRH16896	Soybean	mitochondrion	56.37	53.25
KRH07754	Soybean	cytosol, nucleus, peroxisome	24.01	53.24
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	60.75	53.1
KRH26369	Soybean	cytosol	62.0	52.75
KRH72501	Soybean	mitochondrion	56.37	52.53
KRH44066	Soybean	plastid	61.8	52.3
KRG99502	Soybean	mitochondrion	56.37	52.12
KRH45493	Soybean	mitochondrion	56.16	51.93
KRH21130	Soybean	plastid	56.16	50.19
KRH39500	Soybean	mitochondrion	54.07	50.1
KRH64759	Soybean	cytosol, peroxisome	10.65	49.04
KRH64758	Soybean	cytosol	50.31	48.39
KRH11117	Soybean	plastid	21.29	44.93
KRH18830	Soybean	cytosol, peroxisome, plastid	11.06	41.09

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100815417	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EMBL:ACUP02003292	UniProt:C6ZJY6
EMBL:EU912419	EnsemblPlantsGene:GLYMA_05G152100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999
InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH58850	ProteinID:KRH58850	ProteinID:KRH58850.1	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF11	MetaCyc:PWY-1622
MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841
MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0001B06DF3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:34563195..34565889

Molecular Weight (calculated)

52794.0 Da

IEP (calculated)

6.831

GRAVY (calculated)

-0.270

Length

479 amino acids

Sequence
(BLAST)

001: MDPVSVWGNT PLATVDPEIH DLIEKEKHRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGMPGNRYYG GNEFIDQIEN LCRSRALQAF HLDAQSWGVN
101: VQPYSGSPAN FAAYTAVLNP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNSTTGYIDY DRLEEKALDF RPKLIICGGS AYPRDWDYKR
201: FREIADKCGA LLLCDMAHTS GLVAAQEVNS PFEYCDIVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEN AVYDFEDKIN FAVFPSLQGG PHNHQIGALA
301: VALKQAASPG FKAYAKQVKA NAVALGNYLM GKGYSLVTGG TENHLVLWDL RPLGLTGNKV EKLCDLCNIT VNKNAVFGDS SALAPGGNLD EVSYQILYCS
401: LIRIGMGLVE KDFEQIGEFL HRAVTLTLEI QKEHGKLLKD FNKGLVNNKA IEDLKADVEK FSATFDMPGF LVSEMKYKD

Best Arabidopsis Sequence Match ( AT4G13930.1 )
(BLAST)

001: MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN
101: VQPYSGSPAN FAAYTALLQP HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF RPKLLICGGS AYPRDWDYAR
201: FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301: VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL
401: VEKDFEQIGE FLSRAVTLTL DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D

Arabidopsis Description

SHM4Serine hydroxymethyltransferase 4 [Source:UniProtKB/Swiss-Prot;Acc:O23254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.