CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44066	Soybean	plastid	98.05	97.53
VIT_12s0034g02380.t01	Wine grape	cytosol	82.77	80.76
Solyc01g104000.2.1	Tomato	plastid	79.93	75.76
TraesCS3B01G417800.1	Wheat	cytosol	69.09	75.53
PGSC0003DMT400061157	Potato	cytosol	79.22	75.08
KRH64759	Soybean	cytosol, peroxisome	13.32	72.12
TraesCS3D01G378700.1	Wheat	cytosol	73.18	70.67
TraesCS3A01G385600.1	Wheat	cytosol	73.18	70.43
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	68.38	70.26
HORVU3Hr1G082070.2	Barley	cytosol	73.0	70.02
Zm00001d012247_P001	Maize	cytosol	72.65	69.91
Zm00001d042661_P001	Maize	cytosol	72.47	69.39
GSMUA_Achr6P17750_001	Banana	cytosol	70.16	69.06
EES01843	Sorghum	cytosol	72.47	68.8
Os01t0874900-01	Rice	extracellular	73.0	68.5
Os05t0429000-01	Rice	cytosol	70.87	67.97
GSMUA_Achr10P...	Banana	cytosol	66.43	65.04
KRH64758	Soybean	cytosol	54.88	62.05
KRH58850	Soybean	cytosol	52.75	62.0
KRH42751	Soybean	endoplasmic reticulum, nucleus	54.71	53.85
KRH26204	Soybean	cytosol	18.83	53.27
KRH18830	Soybean	cytosol, peroxisome, plastid	12.08	52.71
GSMUA_Achr10P...	Banana	vacuole	15.81	52.35
KRH07754	Soybean	cytosol, nucleus, peroxisome	19.89	51.85
KRH45493	Soybean	mitochondrion	45.65	49.61
KRH72501	Soybean	mitochondrion	45.29	49.61
KRH16896	Soybean	mitochondrion	44.23	49.11
KRH11116	Soybean	cytosol	21.14	48.77
KRG99502	Soybean	mitochondrion	44.76	48.65
KRH39500	Soybean	mitochondrion	44.05	47.97
KRH21130	Soybean	plastid	45.65	47.95
KRH11117	Soybean	plastid	19.01	47.14

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100810926	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	UniProt:A0A0R4J4J6	EMBL:ACUP02007709
EnsemblPlantsGene:GLYMA_12G170300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545
GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH26369
ProteinID:KRH26369	ProteinID:KRH26369.1	ProteinID:KRH26370.1	ProteinID:KRH26371.1	ProteinID:KRH26372.1	HAMAP:MF_00051
PFAM:PF00464	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	MetaCyc:PWY-1622	MetaCyc:PWY-181
MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI0001D62E8F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:32509864..32514684

Molecular Weight (calculated)

62353.5 Da

IEP (calculated)

7.290

GRAVY (calculated)

-0.354

Length

563 amino acids

Sequence
(BLAST)

001: MDLSHPQSNL SLGFSSSHAS PPPRSDPPVP LQLMEPQTEN GNLDVESDDD EDKEVEEFRI LGHSMCLKRR RDCDSSSSSS AAKRVSVEPD LDARKAAVRA
101: WGCQPLSIAD PDVHEIMEKE KKRQFRGIEL IASENFVCRA VMEALGSHLT NKYSEGMPGA RYYGGNQYID EIETLCCERA LNAFGLDPKC WGVNVQPYSC
201: TSANFAVYTG LLLPGDRIMG LDTPSGGNTS HGYYTPNGKK VSGASIFFES LPYKVNPQTG YIDYDKLEER ALDFRPKILI CGGSSYPREW DYARFRHIAD
301: KCGAVLLCDM AQISGIIAAK ECVNPFDYCD IVTSTTHKSL RGPRGGIIFY RKGTKPRKRG ILLSQGHESD QYDFEEKINF AVFPSMQGGP HNNHIAALAI
401: ALKQVATPEY KAYMQQVKKN AQALACALLR RKCRLVTGGT DNHLILWDLR PLGLTGKFYE KVCETCHITL NKIAIFGDNG TIIPGGVRVG TPAMTSRGCL
501: EAHFETMAEF LIRAAQIASI LQREHGKLQK TTLKGLESNR DVVELRARVE AFATQFAMPG FDI

Best Arabidopsis Sequence Match ( AT1G22020.1 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.