CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042661_P001	Maize	cytosol	95.28	96.09
Zm00001d012247_P001	Maize	cytosol	94.1	95.38
TraesCS3B01G417800.1	Wheat	cytosol	79.93	92.04
TraesCS3D01G378700.1	Wheat	cytosol	87.86	89.37
TraesCS3A01G385600.1	Wheat	cytosol	87.86	89.06
HORVU3Hr1G082070.2	Barley	cytosol	87.18	88.08
Os01t0874900-01	Rice	extracellular	87.69	86.67
KRH64759	Soybean	cytosol, peroxisome	12.82	73.08
KRH26369	Soybean	cytosol	68.8	72.47
KRH44066	Soybean	plastid	68.13	71.38
VIT_12s0034g02380.t01	Wine grape	cytosol	67.96	69.84
GSMUA_Achr6P17750_001	Banana	cytosol	65.94	68.36
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	66.27	67.29
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	61.38	66.42
PGSC0003DMT400061157	Potato	cytosol	66.1	65.99
Solyc01g104000.2.1	Tomato	plastid	65.94	65.82
GSMUA_Achr10P...	Banana	cytosol	63.74	65.74
CDY38837	Canola	cytosol	61.72	65.01
CDY41499	Canola	cytosol	61.72	64.1
Bra016392.1-P	Field mustard	cytosol	62.39	64.01
CDY30643	Canola	cytosol	62.23	63.73
CDY41886	Canola	cytosol	63.41	63.73
Bra036774.1-P	Field mustard	cytosol	63.24	63.56
CDX91734	Canola	cytosol	62.9	63.33
Bra031358.1-P	Field mustard	cytosol	62.23	63.29
AT1G36370.1	Thale cress	plastid	63.58	63.04
CDY04695	Canola	cytosol	61.89	62.52
AT1G22020.1	Thale cress	cytosol	62.06	61.44
EES08452	Sorghum	cytosol	48.4	60.93
KRH64758	Soybean	cytosol	48.23	57.43
EES16245	Sorghum	plastid	50.76	55.13
GSMUA_Achr10P...	Banana	vacuole	14.67	51.18
OQU91027	Sorghum	mitochondrion	42.33	48.93

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EntrezGene:8063116	UniProt:C5XRB9	EnsemblPlants:EES01843
ProteinID:EES01843	ProteinID:EES01843.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488
GO:GO:0005515	GO:GO:0006545	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR001680	InterPro:IPR015421
InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00678	PFscan:PS50082	PANTHER:PTHR11680
PANTHER:PTHR11680:SF7	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161	MetaCyc:PWY-2201	MetaCyc:PWY-3661
MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
EnsemblPlantsGene:SORBI_3003G373600	SUPFAM:SSF53383	unigene:Sbi.12525	InterPro:Ser_HO-MeTrfase	UniParc:UPI0001A84FA9	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	RefSeq:XP_002456723.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:68885087..68890541

Molecular Weight (calculated)

64463.5 Da

IEP (calculated)

7.569

GRAVY (calculated)

-0.327

Length

593 amino acids

Sequence
(BLAST)

001: MDLSRPASSD LSLGLHSHGH ARGHAHAARV HAVAAPLRLF DGAEDAKPER VVAGEADAER DDEDGGDQHF SLLGHSLCVK RPRRVVNGGG CGGGDTSSCS
101: STSAALRPAK RQATGEGSGA DLETRRAAVR AWGNQSLAEA DPAVHALMEQ ELDRQVRGIE LIASENFVCR AVLDALGSHL TNKYSEGAPG ARYYGGNQHI
201: DAIERLCHER ALIAFGLDPA CWGVNVQPYS CTSANLAVYT GLLQPKDRIM GLEPPSGGHV SHGYYTPSGK KVSGASIFFE SMSYKVNPQT GYIDYDKLEE
301: RAMDFHPKIL ICGGSSYPRE WDFARMRLIA DKCGAVLLCD MAHISGLVAA KECRSPFDYC DVVTSTTHKN LRGPRGGIIF FRKGKNLRKR AGSFSQGDDN
401: EYDFEDRINF GVFPSMQGGP HNNHIAALAI TLKQVATPEY KAYIQQVKKN AQALASALLR RKCRLVTGGT DNHLVLWDLR TLGLTGKIFE KVCEACHISI
501: NKTPIYGDNG SISPGGVRIG TPAMTTRGCL EEDFDVIADF LIRATHIASN VLKEHGKVQK EFLRGLQNNR DIIELRNQVE AFASQFAMPG FDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.