Factsheet for Bra036774.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41886	Canola	cytosol	99.15	99.15
AT1G36370.1	Thale cress	plastid	90.85	89.63
TraesCS3B01G417800.1	Wheat	cytosol	62.2	71.26
Bra031358.1-P	Field mustard	cytosol	70.34	71.18
Bra016392.1-P	Field mustard	cytosol	69.15	70.59
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.66	70.38
KRH64759	Soybean	cytosol, peroxisome	12.37	70.19
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	63.73	68.61
GSMUA_Achr6P17750_001	Banana	cytosol	66.44	68.53
TraesCS3D01G378700.1	Wheat	cytosol	64.75	65.52
TraesCS3A01G385600.1	Wheat	cytosol	64.75	65.3
HORVU3Hr1G082070.2	Barley	cytosol	64.58	64.91
GSMUA_Achr10P...	Banana	cytosol	63.05	64.7
Zm00001d012247_P001	Maize	cytosol	63.56	64.1
Os01t0874900-01	Rice	extracellular	64.92	63.83
Bra014001.1-P	Field mustard	cytosol	46.95	63.82
Bra032749.1-P	Field mustard	cytosol	50.51	63.27
Zm00001d042661_P001	Maize	cytosol	63.05	63.27
EES01843	Sorghum	cytosol	63.56	63.24
Os05t0429000-01	Rice	cytosol	61.69	62.01
KRH64758	Soybean	cytosol	50.85	60.24
Bra022129.1-P	Field mustard	cytosol	12.54	52.11
GSMUA_Achr10P...	Banana	vacuole	13.9	48.24
Bra010622.1-P	Field mustard	mitochondrion	41.86	47.78
Bra011796.1-P	Field mustard	mitochondrion	41.53	47.39
Bra016147.1-P	Field mustard	mitochondrion	41.69	47.04
Bra040080.1-P	Field mustard	plastid	41.02	45.75
Bra003928.1-P	Field mustard	mitochondrion	41.02	21.74

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	EnsemblPlantsGene:Bra036774	EnsemblPlants:Bra036774.1	EnsemblPlants:Bra036774.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006545	GO:GO:0006730
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264
GO:GO:0030170	GO:GO:0035999	GO:GO:0044030	GO:GO:0046500	GO:GO:0046686	GO:GO:0055063
InterPro:IPR015421	InterPro:IPR015422	UniProt:M4F6R4	HAMAP:MF_00051	PFAM:PF00464	ScanProsite:PS00096
PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002545DF2	SEG:seg	:	:

Description

AT1G36370 (E=7e-307) SHM7 | SHM7 (serine hydroxymethyltransferase 7); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA08:+:7083867..7086108

Molecular Weight (calculated)

65111.9 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.342

Length

590 amino acids

Sequence
(BLAST)

001: MDLSGSDSNV SLGIGCSHAS SSSMAPTPRI PIADDSINLQ VDPSFRSSPV TFPPIPLQLL EQKVAAVEEP KKDGDEKEDE HFRILGHHMC LKRQRDCPLL
101: LAQSKHPRRT IAGDTDLESR RAAVRAWGDQ PLHLADPDIH EMMEKEKQRQ VKGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT GNQYIDQIEN
201: LCIARALAAF GLEPDKWGVN VQPYSCTSAN FAVYTALLLP GERIMGLDSP SGGHMSHGYC TPAGKKISAT SIFFESFPYK VNPQTGYIDY DKLEDKALDY
301: RPKILICGGS SYPRDWDFSR VRQIADKCGA VLMCDMAHIS GLVATKECSN PFDHCDIVTS TTHKGLRGPR GGIIFYRRGP KIRKQAHHAS HCDSSTHYDL
401: EEKINFAVFP SLQGGPHNNH IAALAIALKQ VATPEYKAYV QQMKKNAQAL ASALLRRKCR LVTGGTDNHL LLWDLTPLGL TGKVYEKVCE MCHITLNKTA
501: IFGDNGTISP GGVRIGTPAM TTRGCVESDF ETIADFLMKA AQITSALQRE HGKSHKEFVK SLCSNKDICD LRNRVEAFAL QYEMPAASQI

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.