Factsheet for VIT_18s0001g04340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64759	Soybean	cytosol, peroxisome	14.04	78.85
VIT_12s0034g02380.t01	Wine grape	cytosol	75.0	75.91
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	69.35	73.91
TraesCS3B01G417800.1	Wheat	cytosol	64.73	73.4
CDY30643	Canola	cytosol	69.69	70.29
CDX91734	Canola	cytosol	70.72	70.12
CDY41499	Canola	cytosol	68.49	70.05
Bra031358.1-P	Field mustard	cytosol	69.86	69.98
Bra036774.1-P	Field mustard	cytosol	70.38	69.66
CDY41886	Canola	cytosol	70.38	69.66
CDY04695	Canola	cytosol	69.86	69.51
CDY38837	Canola	cytosol	66.95	69.45
AT1G36370.1	Thale cress	plastid	71.06	69.4
Bra016392.1-P	Field mustard	cytosol	68.66	69.38
GSMUA_Achr6P17750_001	Banana	cytosol	67.81	69.23
AT1G22020.1	Thale cress	cytosol	70.03	68.28
TraesCS3D01G378700.1	Wheat	cytosol	68.15	68.27
TraesCS3A01G385600.1	Wheat	cytosol	68.32	68.21
HORVU3Hr1G082070.2	Barley	cytosol	68.15	67.8
Os01t0874900-01	Rice	extracellular	69.01	67.17
GSMUA_Achr10P...	Banana	cytosol	65.75	66.78
Zm00001d012247_P001	Maize	cytosol	66.78	66.67
Zm00001d042661_P001	Maize	cytosol	66.78	66.33
EES01843	Sorghum	cytosol	67.29	66.27
Os05t0429000-01	Rice	cytosol	66.61	66.27
VIT_05s0029g00310.t01	Wine grape	cytosol	52.4	64.97
KRH64758	Soybean	cytosol	54.45	63.86
GSMUA_Achr10P...	Banana	vacuole	15.24	52.35
VIT_04s0008g00770.t01	Wine grape	plastid	44.18	48.86
VIT_00s0211g00120.t01	Wine grape	mitochondrion	42.98	48.46
VIT_18s0001g07960.t01	Wine grape	mitochondrion	42.47	48.06
VIT_00s0211g00100.t01	Wine grape	mitochondrion	20.21	47.58
VIT_00s0211g00160.t01	Wine grape	mitochondrion	18.84	46.61
VIT_00s0211g00070.t01	Wine grape	mitochondrion	41.27	46.53
VIT_00s0211g00080.t01	Wine grape	cytosol	14.38	46.15
VIT_00s0211g00090.t01	Wine grape	cytosol	20.03	45.0

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100267713	wikigene:100267713	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	ProteinID:CCB45535
ProteinID:CCB45535.1	UniProt:F6H0N8	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0006545	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422
EntrezGene:LOC100267713	wikigene:LOC100267713	HAMAP:MF_00051	PFAM:PF00464	PANTHER:PTHR11680	PANTHER:PTHR11680:SF27
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	TIGR:TC54472
UniParc:UPI0001985494	ArrayExpress:VIT_18s0001g04340	EnsemblPlantsGene:VIT_18s0001g04340	EnsemblPlants:VIT_18s0001g04340.t01	unigene:Vvi.1292	RefSeq:XP_002285823
RefSeq:XP_002285823.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:3822948..3829597

Molecular Weight (calculated)

64712.2 Da

IEP (calculated)

7.307

GRAVY (calculated)

-0.307

Length

584 amino acids

Sequence
(BLAST)

001: MDASHAQSGL SLGFHSHSSL APMTPLADDS VKLQIASDFS SLGNPIQSVP LQLFEQRCEK FSNGSGGQSE DGEDEEFHIL GHPMCLKRPR DEQFSRSSSP
101: SKVALVESGL EQRRVAVRAW GNQPLSVADP DVFQIMEKEK KRQFKGIELI ASENFVCRAV MEALGSHLTN KYSEGMPGAR YYTGNDYIDQ IELLCCRRAL
201: AAFHLDSEKW GVNVQPYSCT SANFAVYTGL LLPKDRIMGL DSPSGGHLSH GYYMPSGKKV SGTSIFFESL PYKVNPQTGY IDYDKLEEKA LDFRPKILIC
301: GGSSYPREWN YARFRQIADK CGAVLMCDMA QISGIVAAKE CASPFDYCDI VTSTTHKNLR GPRGGIIFYR KGAKARKPGM LLSQGDDSNQ YDFEERINFA
401: VFPSLQGGPH NNHIAALAIA LKQVATPEYK AYMQQVKKNA QALAAALLRK SCKLVTEGTD NHLLLWDLTD LHITGKNYEK VCELCHITLN KTAIYGDNGA
501: ISPGGVRIGS PAMTTRGCLE ADFETIAEFL YRAAVITSAV VTQRELRKFP RDFFKCLQNN KDIVELRNQV ETFASQFAMP GFDI

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.