Factsheet for VIT_00s0211g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0211g00070.t01	Wine grape	mitochondrion	95.95	95.95
VIT_00s0211g00090.t01	Wine grape	cytosol	47.68	95.0
VIT_00s0211g00100.t01	Wine grape	mitochondrion	44.4	92.74
VIT_00s0211g00160.t01	Wine grape	mitochondrion	42.08	92.37
VIT_18s0001g07960.t01	Wine grape	mitochondrion	90.15	90.5
Os03t0738400-01	Rice	mitochondrion	85.52	86.35
OQU91027	Sorghum	mitochondrion	84.75	85.58
TraesCS4A01G246100.1	Wheat	mitochondrion	83.78	85.1
TraesCS4B01G069300.1	Wheat	mitochondrion	83.78	85.1
TraesCS4D01G068100.1	Wheat	mitochondrion	83.78	85.1
HORVU4Hr1G011500.1	Barley	plasma membrane	83.98	81.61
VIT_00s0211g00080.t01	Wine grape	cytosol	22.97	65.38
VIT_05s0029g00310.t01	Wine grape	cytosol	53.28	58.6
VIT_04s0008g00770.t01	Wine grape	plastid	55.79	54.73
VIT_12s0034g02380.t01	Wine grape	cytosol	49.61	44.54
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	48.46	42.98

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100243424	wikigene:100243424	EntrezGene:100854244	wikigene:100854244	Gene3D:3.40.640.10	Gene3D:3.90.1150.10
ProteinID:CBI25704	ProteinID:CBI25704.3	ncoils:Coil	UniProt:D7T5C1	EMBL:FN595522	GO:GO:0003674
GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100243424	wikigene:LOC100243424	EntrezGene:LOC100854244
wikigene:LOC100854244	HAMAP:MF_00051	PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680
PANTHER:PTHR11680:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BS	TIGR:TC56648	TIGR:TC57456	TIGR:TC65645	UniParc:UPI0001BE2C53	ArrayExpress:VIT_00s0211g00120
EnsemblPlantsGene:VIT_00s0211g00120	EnsemblPlants:VIT_00s0211g00120.t01	unigene:Vvi.24437	unigene:Vvi.24485	unigene:Vvi.26286	RefSeq:XP_002262872
RefSeq:XP_002262872.2	RefSeq:XP_003635097	RefSeq:XP_003635097.1	RefSeq:XP_010646400.1	RefSeq:XP_010646401.1	RefSeq:XP_010646402.1

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:D7T5C1]

Coordinates

chrUn:-:12952242..12959764

Molecular Weight (calculated)

57215.8 Da

IEP (calculated)

9.072

GRAVY (calculated)

-0.247

Length

518 amino acids

Sequence
(BLAST)

001: MAMAMALRRL SSSVDKPVRS VFNGGSIYYM ASLPNEAVYE KEKSRVTWPK QLNAPLGVVD PEIADIIELE KARQWKGLEL IPSENFTSVS VMQAVGSIMT
101: NKYSEGYPGA RYYGGNEYID MAESLCQKRA LEAFRLDPAK WGVNVQSLSG SPANFQVYTA LLKAHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM
201: PYRLNESTGY IDYDQLEKSA TLFRPKLIVA GASAYARLYD YARIRKVCDK QKAILLADMA HISGLVAAGV IPSPFEYADI VTTTTHKSLR GPRGAMIFFR
301: KGVKEVNKQG KEVLYDYEDK INQAVFPGLQ GGPHNHTIAG LAVALKQATT SEYKAYQEQV LSNCSKFAET LIKKGYELVS GGTENHLVLV NLKNKGIDGS
401: RVEKVLESVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFVEEDFVKV AEYFDAAVTV AVKIKAETTG TKLKDFLATM QSSPHLQSEI AKLRHEVEEY
501: AKQFPTIGFE KETMKYKN

Best Arabidopsis Sequence Match ( AT4G37930.1 )
(BLAST)

001: MAMAMALRRL SSSIDKPIRP LIRSTSCYMS SLPSEAVDEK ERSRVTWPKQ LNAPLEEVDP EIADIIEHEK ARQWKGLELI PSENFTSVSV MQAVGSVMTN
101: KYSEGYPGAR YYGGNEYIDM AETLCQKRAL EAFRLDPEKW GVNVQPLSGS PANFHVYTAL LKPHERIMAL DLPHGGHLSH GYQTDTKKIS AVSIFFETMP
201: YRLDESTGYI DYDQMEKSAT LFRPKLIVAG ASAYARLYDY ARIRKVCNKQ KAVMLADMAH ISGLVAANVI PSPFDYADVV TTTTHKSLRG PRGAMIFFRK
301: GVKEINKQGK EVLYDFEDKI NQAVFPGLQG GPHNHTITGL AVALKQATTS EYKAYQEQVL SNSAKFAQTL MERGYELVSG GTDNHLVLVN LKPKGIDGSR
401: VEKVLEAVHI ASNKNTVPGD VSAMVPGGIR MGTPALTSRG FVEEDFAKVA EYFDKAVTIA LKVKSEAQGT KLKDFVSAME SSSTIQSEIA KLRHEVEEFA
501: KQFPTIGFEK ETMKYKN

Arabidopsis Description

SHM1Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.