Factsheet for VIT_12s0034g02380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26369	Soybean	cytosol	80.76	82.77
KRH44066	Soybean	plastid	80.07	81.63
Solyc01g104000.2.1	Tomato	plastid	79.55	77.27
PGSC0003DMT400061157	Potato	cytosol	79.03	76.77
TraesCS3B01G417800.1	Wheat	cytosol	67.76	75.92
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	75.91	75.0
TraesCS3D01G378700.1	Wheat	cytosol	71.06	70.33
TraesCS3A01G385600.1	Wheat	cytosol	71.23	70.26
GSMUA_Achr6P17750_001	Banana	cytosol	69.15	69.76
HORVU3Hr1G082070.2	Barley	cytosol	70.88	69.68
Zm00001d012247_P001	Maize	cytosol	69.5	68.55
Os01t0874900-01	Rice	extracellular	71.06	68.33
Zm00001d042661_P001	Maize	cytosol	69.32	68.03
EES01843	Sorghum	cytosol	69.84	67.96
Os05t0429000-01	Rice	cytosol	68.11	66.95
GSMUA_Achr10P...	Banana	cytosol	66.38	66.61
VIT_05s0029g00310.t01	Wine grape	cytosol	53.55	65.61
GSMUA_Achr10P...	Banana	vacuole	15.42	52.35
VIT_00s0211g00120.t01	Wine grape	mitochondrion	44.54	49.61
VIT_18s0001g07960.t01	Wine grape	mitochondrion	44.02	49.22
VIT_00s0211g00080.t01	Wine grape	cytosol	15.25	48.35
VIT_04s0008g00770.t01	Wine grape	plastid	44.02	48.11
VIT_00s0211g00070.t01	Wine grape	mitochondrion	42.63	47.49
VIT_00s0211g00100.t01	Wine grape	mitochondrion	20.28	47.18
VIT_00s0211g00090.t01	Wine grape	cytosol	21.14	46.92
VIT_00s0211g00160.t01	Wine grape	mitochondrion	18.89	46.19

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100241225	wikigene:100241225	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	ProteinID:CCB48666
ProteinID:CCB48666.1	UniProt:F6H906	EMBL:FN595497	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372
GO:GO:0005488	GO:GO:0005515	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0035999
InterPro:IPR001680	InterPro:IPR015421	InterPro:IPR015422	EntrezGene:LOC100241225	wikigene:LOC100241225	HAMAP:MF_00051
PFAM:PF00464	ScanProsite:PS00096	ScanProsite:PS00678	PFscan:PS50082	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS
UniParc:UPI00019846AF	ArrayExpress:VIT_12s0034g02380	EnsemblPlantsGene:VIT_12s0034g02380	EnsemblPlants:VIT_12s0034g02380.t01	unigene:Vvi.2071	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	RefSeq:XP_002266312	RefSeq:XP_002266312.1	SEG:seg	:	:

Description

Serine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:F6H906]

Coordinates

chr12:-:18842918..18856101

Molecular Weight (calculated)

64079.4 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.351

Length

577 amino acids

Sequence
(BLAST)

001: MDLNSSSNLS LGFSSSSSVQ IADDSIAFQI DSSFRESTNP MPTAPLQLLE ENHRGENGGG GGESADEEEK VEEFRILGHS MCLKRRRDGE VTCSAVRRDP
101: MEAELEARRS AVRAWGNQRL CVADPDVFDI MEKEKRRQFK GIELIASENF VCRAVMEALG SHLTNKYSEG MPGARYYCGN QYIDEIEWLC CKRALKAFDL
201: DPENWGVNVQ PYSCTSANFA VYTGLLLPGD RIMGLDTPSG GNTSHGYYTP NGRKVSGASI FFESLPYKVN PQTGYIDFDK LEERALDFRP KILICGGSSY
301: PREWDYARFR QIADKCGAVL LCDMAQISGL VAAKECVNPF DYCDIVTSTT HKSLRGPRGG IIFYRKGTKP RKRGMILSQG DDNDHYDYEE KINFAVFPSL
401: QGGPHNNHIA ALAIALKQVA TPEYKAYMLQ VKKNAQALAS ALLRRKCRLV TGGTDNHLLL WDLRTLGLTG KNYEKVCEMC HITLNKIAIF GDNGTITPGG
501: VRIGTPAMTS RGCLEADFET IADFLLRAAQ IASVVQREHG KMQKAFLKGL ESNKDIVELR TRVEIFATQF VMPGFDG

Best Arabidopsis Sequence Match ( AT1G22020.2 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.