Factsheet for Zm00001d042661_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01843	Sorghum	cytosol	96.09	95.28
Zm00001d012247_P001	Maize	cytosol	94.39	94.87
TraesCS3B01G417800.1	Wheat	cytosol	80.27	91.65
TraesCS3D01G378700.1	Wheat	cytosol	88.27	89.02
TraesCS3A01G385600.1	Wheat	cytosol	88.27	88.72
HORVU3Hr1G082070.2	Barley	cytosol	88.1	88.25
Os01t0874900-01	Rice	extracellular	87.93	86.17
KRH64759	Soybean	cytosol, peroxisome	12.93	73.08
KRH26369	Soybean	cytosol	69.39	72.47
KRH44066	Soybean	plastid	68.37	71.02
Zm00001d040457_P001	Maize	mitochondrion	11.56	70.1
VIT_12s0034g02380.t01	Wine grape	cytosol	68.03	69.32
GSMUA_Achr6P17750_001	Banana	cytosol	66.16	68.01
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	66.33	66.78
PGSC0003DMT400061157	Potato	cytosol	66.84	66.16
Solyc01g104000.2.1	Tomato	plastid	66.5	65.82
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	61.22	65.69
GSMUA_Achr10P...	Banana	cytosol	63.78	65.22
CDY38837	Canola	cytosol	62.24	65.01
CDY41499	Canola	cytosol	62.07	63.92
Bra016392.1-P	Field mustard	cytosol	62.76	63.84
CDY30643	Canola	cytosol	62.41	63.39
CDY41886	Canola	cytosol	63.44	63.22
Bra036774.1-P	Field mustard	cytosol	63.27	63.05
AT1G36370.1	Thale cress	plastid	64.12	63.04
CDX91734	Canola	cytosol	62.93	62.82
Bra031358.1-P	Field mustard	cytosol	62.24	62.78
CDY04695	Canola	cytosol	62.41	62.52
AT1G22020.1	Thale cress	cytosol	62.41	61.27
KRH64758	Soybean	cytosol	47.96	56.63
Zm00001d049234_P001	Maize	plastid	48.98	54.75
GSMUA_Achr10P...	Banana	vacuole	14.8	51.18
Zm00001d030859_P001	Maize	plastid	51.19	47.85
Zm00001d009738_P001	Maize	cytosol, plastid	13.95	37.79

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
EntrezGene:100191532	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	UniProt:B4F947	EMBL:BT033635
EMBL:BT063946	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0005515
GO:GO:0006545	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019264	GO:GO:0030170	GO:GO:0032259	GO:GO:0035999	InterPro:IPR001680
InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	ProteinID:ONM35995.1	PFAM:PF00464	ScanProsite:PS00678
PFscan:PS50082	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major
SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	UniParc:UPI00017B6237	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	EnsemblPlantsGene:Zm00001d042661
EnsemblPlants:Zm00001d042661_P001	EnsemblPlants:Zm00001d042661_T001	SEG:seg	:	:	:

Description

Serine hydroxymethyltransferase 7

Coordinates

chr3:-:175809287..175815135

Molecular Weight (calculated)

64105.8 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.406

Length

588 amino acids

Sequence
(BLAST)

001: MDLSRPTSSD LSLGLHSHGH AHAHARRHAV AAPLRLFDDA EEPKPERVGA GEADAERDDE DGGDQHFSLL GHSLCVKRPR RAGNGGGGGE TSSCSSTSAA
101: LRPAKRQATG EGSGADLETR RAAVRAWGNQ SLAEADPDVH SLMEQELDRQ VRGIELIASE NFVCRAVLDA LGSHLTNKYS EGAPGARYYG GNQHIDAIER
201: LCHERALTAF GLDPACWGVN VQPYSCTSAN LAVYTGLLQP KDRIMGLEPP SGGHVSHGYY TPSGKKVSGA SIFFESMSYK VNPQTGYIDY DKLEERAMDF
301: HPKILICGGS SYPREWDFAR MRLIADKCGA VLLCDMAHIS GLVAAKECRS PFDYCDVVTS TTHKNLRGPR GGIIFFRKGK NLRKRAGSFS QGDENEYDFE
401: DRINFGVFPS MQGGPHNNHI AGLAITLKQV ATSEYKAYIQ QVKKNAQALA SALIRRKCRL VTGGTDNHLV LWDLRTLGLT GKIFEKVCEA CHISVNKTPI
501: YGDNGSISPG GVRIGTPAMT TRGCLEEDFE VIADFLIRAT QIANNVLKEH GKVQKEFLRG LQNNNDVIEL RNQVEAFASQ FAMPGFDV

Best Arabidopsis Sequence Match ( AT1G36370.1 )
(BLAST)

001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE

Arabidopsis Description

SHM7Serine hydroxymethyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.