Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30643 | Canola | cytosol | 85.98 | 88.95 |
| Bra031358.1-P | Field mustard | cytosol | 86.48 | 88.85 |
| CDY04695 | Canola | cytosol | 86.98 | 88.76 |
| CDY41499 | Canola | cytosol | 83.14 | 87.22 |
| CDY38837 | Canola | cytosol | 81.97 | 87.21 |
| Bra016392.1-P | Field mustard | cytosol | 83.81 | 86.85 |
| AT1G36370.1 | Thale cress | plastid | 71.95 | 72.07 |
| VIT_18s0001g04340.t01 | Wine grape | cytosol, nucleus, plastid | 68.28 | 70.03 |
| TraesCS3B01G417800.1 | Wheat | cytosol | 58.6 | 68.16 |
| KRH53150 | Soybean | cytosol, nucleus, peroxisome, plastid | 61.6 | 67.34 |
| KRH64759 | Soybean | cytosol, peroxisome | 11.69 | 67.31 |
| GSMUA_Achr6P17750_001 | Banana | cytosol | 62.94 | 65.91 |
| TraesCS3D01G378700.1 | Wheat | cytosol | 61.27 | 62.95 |
| TraesCS3A01G385600.1 | Wheat | cytosol | 61.44 | 62.91 |
| Zm00001d012247_P001 | Maize | cytosol | 61.27 | 62.73 |
| HORVU3Hr1G082070.2 | Barley | cytosol | 61.44 | 62.69 |
| Zm00001d042661_P001 | Maize | cytosol | 61.27 | 62.41 |
| Os01t0874900-01 | Rice | extracellular | 62.44 | 62.33 |
| GSMUA_Achr10P... | Banana | cytosol | 59.77 | 62.26 |
| EES01843 | Sorghum | cytosol | 61.44 | 62.06 |
| Os05t0429000-01 | Rice | cytosol | 60.77 | 62.01 |
| AT4G13930.1 | Thale cress | cytosol | 47.58 | 60.51 |
| KRH64758 | Soybean | cytosol | 50.08 | 60.24 |
| AT4G13890.1 | Thale cress | cytosol | 46.24 | 58.94 |
| AT4G37930.1 | Thale cress | mitochondrion | 41.57 | 48.16 |
| GSMUA_Achr10P... | Banana | vacuole | 13.36 | 47.06 |
| AT4G32520.1 | Thale cress | plastid | 41.07 | 46.5 |
| AT5G26780.3 | Thale cress | mitochondrion | 40.23 | 45.22 |
Protein Annotations
| KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
| Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | MapMan:4.1.4.3.1 | EntrezGene:838807 | ProteinID:AAF86546.1 | ProteinID:AEE30186.1 |
| ProteinID:ANM60843.1 | ArrayExpress:AT1G22020 | EnsemblPlantsGene:AT1G22020 | RefSeq:AT1G22020 | TAIR:AT1G22020 | RefSeq:AT1G22020-TAIR-G |
| EnsemblPlants:AT1G22020.1 | TAIR:AT1G22020.1 | EMBL:AY125514 | EMBL:BT004532 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004372 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006545 | GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 | InterPro:IPR015421 | InterPro:IPR015422 |
| HAMAP:MF_00051 | RefSeq:NP_001323098.1 | RefSeq:NP_173621.1 | PFAM:PF00464 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF7 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 |
| InterPro:PyrdxlP-dep_Trfase_major | UniProt:Q9LM59 | Symbol:SHM6 | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase | InterPro:Ser_HO-MeTrfase_PLP_BS |
| UniParc:UPI000000C395 | SEG:seg | : | : | : | : |
Description
SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
Coordinates
chr1:+:7754304..7758019
Molecular Weight (calculated)
66650.6 Da
IEP (calculated)
6.852
GRAVY (calculated)
-0.360
Length
599 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.