CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30643	Canola	cytosol	94.72	96.03
CDY38837	Canola	cytosol	84.16	87.74
CDY41499	Canola	cytosol	85.35	87.74
AT1G22020.1	Thale cress	cytosol	88.76	86.98
CDY41886	Canola	cytosol	71.38	71.02
CDX91734	Canola	cytosol	71.04	70.8
VIT_18s0001g04340.t01	Wine grape	cytosol, nucleus, plastid	69.51	69.86
KRH53150	Soybean	cytosol, nucleus, peroxisome, plastid	63.71	68.25
TraesCS3B01G417800.1	Wheat	cytosol	59.45	67.77
KRH64759	Soybean	cytosol, peroxisome	11.75	66.35
GSMUA_Achr6P17750_001	Banana	cytosol	64.4	66.08
Os05t0429000-01	Rice	cytosol	63.2	63.2
Zm00001d012247_P001	Maize	cytosol	62.52	62.73
TraesCS3A01G385600.1	Wheat	cytosol	62.35	62.56
TraesCS3D01G378700.1	Wheat	cytosol	62.01	62.44
Zm00001d042661_P001	Maize	cytosol	62.52	62.41
HORVU3Hr1G082070.2	Barley	cytosol	62.18	62.18
GSMUA_Achr10P...	Banana	cytosol	60.65	61.91
EES01843	Sorghum	cytosol	62.52	61.89
CDY50421	Canola	cytosol	45.49	61.52
CDY01173	Canola	cytosol	45.49	61.52
Os01t0874900-01	Rice	extracellular	62.86	61.5
CDY69223	Canola	cytosol	49.23	61.36
CDY47310	Canola	cytosol	45.32	61.29
KRH64758	Soybean	cytosol	51.79	61.04
CDX90395	Canola	cytosol	29.13	48.86
CDY49684	Canola	mitochondrion	42.76	48.55
CDX69344	Canola	mitochondrion	42.76	48.55
CDY49212	Canola	mitochondrion	42.08	48.53
CDX75685	Canola	mitochondrion	42.59	48.36
CDX96315	Canola	mitochondrion	41.91	47.86
CDX72795	Canola	mitochondrion	42.08	46.6
GSMUA_Achr10P...	Banana	vacuole	13.46	46.47
CDY47659	Canola	cytosol	10.22	44.12
CDY53135	Canola	cytosol	10.22	44.12
CDY39889	Canola	plastid	41.57	42.07
CDY23328	Canola	golgi, plasma membrane	41.74	39.52
CDX68316	Canola	mitochondrion	42.59	21.37

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.4.3.1	GO:A0A078ES18	EnsemblPlants:CDY04695	ProteinID:CDY04695
ProteinID:CDY04695.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264	GO:GO:0030170
GO:GO:0035999	EnsemblPlantsGene:GSBRNA2T00119325001	InterPro:IPR015421	InterPro:IPR015422	HAMAP:MF_00051	PFAM:PF00464
ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF7	MetaCyc:PWY-1622	MetaCyc:PWY-181	MetaCyc:PWY-2161
MetaCyc:PWY-2201	MetaCyc:PWY-3661	MetaCyc:PWY-3661-1	MetaCyc:PWY-3841	MetaCyc:PWY-5497	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniPathway:UPA00193
UniPathway:UPA00288	UniParc:UPI0004EDFA19	SEG:seg	:	:	:

Description

BnaC05g17330D

Coordinates

chrLK031956:+:1040944..1043975

Molecular Weight (calculated)

65161.5 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.366

Length

587 amino acids

Sequence
(BLAST)

001: MDRAAQSDLS LGFSSSHALP LPPPRIPIAD DSITLQIDSS FRPSYNSTPP VPLQLLEQRF EGTGSSSRAI VDKDEDFDDD QRGEFILLGQ PLKLKRCRGS
101: SSSSSMRSPS PCKRFAADPE TRRAAVKAWG DQSLQEADPE IHEFMEKEKQ RQFRGIELIA SENFVCRAVM EALGSHLTNK YSEGMPGARY YTGNQYIDHI
201: EILCQERALQ AFGLHHEHWG VNVQPYSCTS ANFAVFSGLL LPGERIMGLD SPSGGHMSHG YYTPGGKKVS GASIFFESFP YKVDPRTGYI DYDKLEEKAL
301: DYRPKILICG GSSYPRDWDF PRFRYVADKC GAVLMFDMAQ ISGLVAAKES PNPFDYCDIV TSTTHKSLRG PRGGIIFYRR GFKGKKQSIN LNHCESNIQY
401: DFEEKINFSV FPSLQGGPHN NHIAALAIAL KQAASPEYKA YMRQVKKNAK ALASALISKN CKLVTNGTDN HLMLWDLTPL GLTGKVYEKV CEMCHITVNK
501: VAIFSENGVI SPGGVRIGSP AMTSRGCLES DFETMAEFLY RAALIASAAQ REQGKSLKSI YHCKDIADLR NQVEAFASQF AMPAFDM

Best Arabidopsis Sequence Match ( AT1G22020.2 )
(BLAST)

001: MDRIAQSDLS LGFGSSHALP LPHPPRIPIA DDSITLQIDS SFRPSSNPMP PVPLQLLEQR FDVTGSCSRV VEEDDEVVGD NDDDDQREEE QFILLGHPMK
101: LKRGRGGNSY SLASSSPCKR FVVDSGIESR RAVVRAWGNQ SIEEADPEIH EFMEKEKQRQ FRGIELIASE NFVCRAVMEA LGSHLTNKYS EGMPGARYYT
201: GNQYIDQIEI LCQERALAAF GLNHEKWGVN VQPYSCTSAN FAVFTGLLMP GERIMGLDSP SGGHMSHGYY TPGGKKVSGA SIFFESFPYK VDPRTGYIDY
301: DKLEEKALDY RPKILICGGS SYPRDWEFPR FRHIADKCGA VLMFDMAQIS GLVAAKESPN PFDYCDIVTS TTHKSLRGPR GGIIFYKRGL KPKKQSINLN
401: HCESNIQYDF EEKINFSVFP SLQGGPHNNH IAALAIALKQ AASPEYKLYM RQVKKNAKAL ASALISRKCK LITGGTDNHL LLWDLTPLGL TGKVYEKVCE
501: MCHITVNKVA IFSENGVISP GGVRIGSPAM TSRGCLEPEF ETMADFLYRA AQIASAAQRE HGKLQKEPLK SIYHCKEIAD LRNQVEAFAT QFAMPAFDM

Arabidopsis Description

SHM6Serine hydroxymethyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.