Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra040080.1-P | Field mustard | plastid | 84.19 | 98.68 |
CDY39889 | Canola | plastid | 91.29 | 97.59 |
AT4G32520.1 | Thale cress | plastid | 76.13 | 89.22 |
GSMUA_Achr10P... | Banana | cytosol | 51.77 | 84.47 |
KRH11116 | Soybean | cytosol | 31.29 | 79.51 |
Solyc12g095930.1.1 | Tomato | plastid | 65.81 | 77.42 |
VIT_04s0008g00770.t01 | Wine grape | plastid | 65.81 | 77.27 |
Solyc08g065490.2.1 | Tomato | nucleus, plastid | 65.0 | 76.91 |
KRH21130 | Soybean | plastid | 63.39 | 73.32 |
KRH26204 | Soybean | cytosol | 22.9 | 71.36 |
KRH07754 | Soybean | cytosol, nucleus, peroxisome | 24.03 | 68.98 |
KRH11117 | Soybean | plastid | 23.87 | 65.2 |
PGSC0003DMT400002684 | Potato | plastid | 21.13 | 62.09 |
CDY01173 | Canola | cytosol | 41.77 | 59.68 |
CDY50421 | Canola | cytosol | 41.77 | 59.68 |
CDY47310 | Canola | cytosol | 41.61 | 59.45 |
CDY69223 | Canola | cytosol | 44.19 | 58.17 |
CDY49212 | Canola | mitochondrion | 45.16 | 55.01 |
CDX75685 | Canola | mitochondrion | 45.81 | 54.93 |
CDX69344 | Canola | mitochondrion | 45.65 | 54.74 |
CDX96315 | Canola | mitochondrion | 45.16 | 54.47 |
CDX90395 | Canola | cytosol | 30.65 | 54.29 |
CDY49684 | Canola | mitochondrion | 45.16 | 54.16 |
CDX72795 | Canola | mitochondrion | 45.32 | 53.02 |
CDY38837 | Canola | cytosol | 38.55 | 42.45 |
CDY41499 | Canola | cytosol | 39.03 | 42.38 |
CDY30643 | Canola | cytosol | 39.52 | 42.31 |
CDY04695 | Canola | cytosol | 39.52 | 41.74 |
CDY41886 | Canola | cytosol | 39.52 | 41.53 |
CDX91734 | Canola | cytosol | 39.35 | 41.43 |
CDY53135 | Canola | cytosol | 6.77 | 30.88 |
CDY47659 | Canola | cytosol | 6.77 | 30.88 |
CDX68316 | Canola | mitochondrion | 49.68 | 26.32 |
Protein Annotations
KEGG:00260+2.1.2.1 | KEGG:00460+2.1.2.1 | KEGG:00630+2.1.2.1 | KEGG:00670+2.1.2.1 | KEGG:00680+2.1.2.1 | MapMan:1.3.5 |
Gene3D:3.40.640.10 | Gene3D:3.90.1150.10 | GO:A0A078GFC4 | UniProt:A0A078GFC4 | EnsemblPlants:CDY23328 | ProteinID:CDY23328 |
ProteinID:CDY23328.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004372 | GO:GO:0005488 | GO:GO:0006545 |
GO:GO:0006730 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 |
GO:GO:0019264 | GO:GO:0030170 | GO:GO:0035999 | EnsemblPlantsGene:GSBRNA2T00021914001 | InterPro:IPR015421 | InterPro:IPR015422 |
HAMAP:MF_00051 | PFAM:PF00464 | ScanProsite:PS00096 | PANTHER:PTHR11680 | PANTHER:PTHR11680:SF20 | MetaCyc:PWY-1622 |
MetaCyc:PWY-181 | MetaCyc:PWY-2161 | MetaCyc:PWY-2201 | MetaCyc:PWY-3661 | MetaCyc:PWY-3661-1 | MetaCyc:PWY-3841 |
MetaCyc:PWY-5497 | InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | InterPro:PyrdxlP-dep_Trfase_major | SUPFAM:SSF53383 | InterPro:Ser_HO-MeTrfase |
InterPro:Ser_HO-MeTrfase_PLP_BS | TMHMM:TMhelix | UniPathway:UPA00193 | UniPathway:UPA00288 | UniParc:UPI0004EF03C2 | SEG:seg |
Description
BnaA08g12180DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078GFC4]
Coordinates
chrLK032142:-:537189..540458
Molecular Weight (calculated)
68670.9 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.043
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVLFMVDD VVCRYCFSVA VLFLEPGAFC VCWVCVNPTY IYVYVVTHTI CYSVYFTYSS SFSDSLPSPL LSHLFLQSSN FFLPYRSREK MQACCGGTSM
101: GSLQQPVRVQ RPVFAPITSP VTKFSQQLKF SFPRPCPSLF LRKSSVFERR ASSVSAPDVE TTSNEIPFED YSRREVDPEV DDIITKEKNR QFRSLELIAS
201: ENFTSRAVME TVGSCLTNKY SEGLPGKRYY GGNEFIDQLE TLCQNRALAT FRLDSTKWGV NVQPLSGSPA NFAVYTAILK PHDRIMGLDL PHGGHLSHGF
301: MTAKRRVSGT SIYFESMPYR LDESTGGIVD YDMLEKTAVL FRPKLIIAGA SAYSRDFDYP RMRKIADSVG AFLMMDMAHI SGLVAASVVA DPFEYCDIVT
401: TTTHKSLRGP RGGMIFFKKD PVNGVELESA INNAVFPGLQ GGPHNHTIGG LAVCLKHAQS PEFKAYQKRV VANCRSLANR LVELGFKLVS GGSDNHLVLV
501: DLRPFGMDGA RVEKILDMAS ITLNKNSVPG DKSALVPGGI RIGTPAMTTR GLSEKDFVVV ADLIKEGVEI TMEAKKLVSG TKLGEFTKFV TSPEFPLRER
601: VESLKDRVES FTSRFPIPGV
101: GSLQQPVRVQ RPVFAPITSP VTKFSQQLKF SFPRPCPSLF LRKSSVFERR ASSVSAPDVE TTSNEIPFED YSRREVDPEV DDIITKEKNR QFRSLELIAS
201: ENFTSRAVME TVGSCLTNKY SEGLPGKRYY GGNEFIDQLE TLCQNRALAT FRLDSTKWGV NVQPLSGSPA NFAVYTAILK PHDRIMGLDL PHGGHLSHGF
301: MTAKRRVSGT SIYFESMPYR LDESTGGIVD YDMLEKTAVL FRPKLIIAGA SAYSRDFDYP RMRKIADSVG AFLMMDMAHI SGLVAASVVA DPFEYCDIVT
401: TTTHKSLRGP RGGMIFFKKD PVNGVELESA INNAVFPGLQ GGPHNHTIGG LAVCLKHAQS PEFKAYQKRV VANCRSLANR LVELGFKLVS GGSDNHLVLV
501: DLRPFGMDGA RVEKILDMAS ITLNKNSVPG DKSALVPGGI RIGTPAMTTR GLSEKDFVVV ADLIKEGVEI TMEAKKLVSG TKLGEFTKFV TSPEFPLRER
601: VESLKDRVES FTSRFPIPGV
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
Arabidopsis Description
SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.