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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 6
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:golgi
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040080.1-P Field mustard plastid 84.19 98.68
CDY39889 Canola plastid 91.29 97.59
AT4G32520.1 Thale cress plastid 76.13 89.22
GSMUA_Achr10P... Banana cytosol 51.77 84.47
KRH11116 Soybean cytosol 31.29 79.51
Solyc12g095930.1.1 Tomato plastid 65.81 77.42
VIT_04s0008g00770.t01 Wine grape plastid 65.81 77.27
Solyc08g065490.2.1 Tomato nucleus, plastid 65.0 76.91
KRH21130 Soybean plastid 63.39 73.32
KRH26204 Soybean cytosol 22.9 71.36
KRH07754 Soybean cytosol, nucleus, peroxisome 24.03 68.98
KRH11117 Soybean plastid 23.87 65.2
PGSC0003DMT400002684 Potato plastid 21.13 62.09
CDY01173 Canola cytosol 41.77 59.68
CDY50421 Canola cytosol 41.77 59.68
CDY47310 Canola cytosol 41.61 59.45
CDY69223 Canola cytosol 44.19 58.17
CDY49212 Canola mitochondrion 45.16 55.01
CDX75685 Canola mitochondrion 45.81 54.93
CDX69344 Canola mitochondrion 45.65 54.74
CDX96315 Canola mitochondrion 45.16 54.47
CDX90395 Canola cytosol 30.65 54.29
CDY49684 Canola mitochondrion 45.16 54.16
CDX72795 Canola mitochondrion 45.32 53.02
CDY38837 Canola cytosol 38.55 42.45
CDY41499 Canola cytosol 39.03 42.38
CDY30643 Canola cytosol 39.52 42.31
CDY04695 Canola cytosol 39.52 41.74
CDY41886 Canola cytosol 39.52 41.53
CDX91734 Canola cytosol 39.35 41.43
CDY53135 Canola cytosol 6.77 30.88
CDY47659 Canola cytosol 6.77 30.88
CDX68316 Canola mitochondrion 49.68 26.32
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10GO:A0A078GFC4UniProt:A0A078GFC4EnsemblPlants:CDY23328ProteinID:CDY23328
ProteinID:CDY23328.1GO:GO:0003674GO:GO:0003824GO:GO:0004372GO:GO:0005488GO:GO:0006545
GO:GO:0006730GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016740
GO:GO:0019264GO:GO:0030170GO:GO:0035999EnsemblPlantsGene:GSBRNA2T00021914001InterPro:IPR015421InterPro:IPR015422
HAMAP:MF_00051PFAM:PF00464ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF20MetaCyc:PWY-1622
MetaCyc:PWY-181MetaCyc:PWY-2161MetaCyc:PWY-2201MetaCyc:PWY-3661MetaCyc:PWY-3661-1MetaCyc:PWY-3841
MetaCyc:PWY-5497InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383InterPro:Ser_HO-MeTrfase
InterPro:Ser_HO-MeTrfase_PLP_BSTMHMM:TMhelixUniPathway:UPA00193UniPathway:UPA00288UniParc:UPI0004EF03C2SEG:seg
Description
BnaA08g12180DSerine hydroxymethyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078GFC4]
Coordinates
chrLK032142:-:537189..540458
Molecular Weight (calculated)
68670.9 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.043
Length
620 amino acids
Sequence
(BLAST)
001: MVLVLFMVDD VVCRYCFSVA VLFLEPGAFC VCWVCVNPTY IYVYVVTHTI CYSVYFTYSS SFSDSLPSPL LSHLFLQSSN FFLPYRSREK MQACCGGTSM
101: GSLQQPVRVQ RPVFAPITSP VTKFSQQLKF SFPRPCPSLF LRKSSVFERR ASSVSAPDVE TTSNEIPFED YSRREVDPEV DDIITKEKNR QFRSLELIAS
201: ENFTSRAVME TVGSCLTNKY SEGLPGKRYY GGNEFIDQLE TLCQNRALAT FRLDSTKWGV NVQPLSGSPA NFAVYTAILK PHDRIMGLDL PHGGHLSHGF
301: MTAKRRVSGT SIYFESMPYR LDESTGGIVD YDMLEKTAVL FRPKLIIAGA SAYSRDFDYP RMRKIADSVG AFLMMDMAHI SGLVAASVVA DPFEYCDIVT
401: TTTHKSLRGP RGGMIFFKKD PVNGVELESA INNAVFPGLQ GGPHNHTIGG LAVCLKHAQS PEFKAYQKRV VANCRSLANR LVELGFKLVS GGSDNHLVLV
501: DLRPFGMDGA RVEKILDMAS ITLNKNSVPG DKSALVPGGI RIGTPAMTTR GLSEKDFVVV ADLIKEGVEI TMEAKKLVSG TKLGEFTKFV TSPEFPLRER
601: VESLKDRVES FTSRFPIPGV
Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
Arabidopsis Description
SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.