Factsheet for Bra040080.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021125.1-P
Bra027220.1-P
Bra040080.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32520.1	Bra021125.1-P	AT3G15660.1	21798944
AT4G32520.1	Bra027220.1-P	AT3G15660.1	21798944
AT4G32520.1	Bra040080.1-P	AT4G32520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G32520.1	Thale cress	plastid	89.41	89.41
GSMUA_Achr10P...	Banana	cytosol	60.68	84.47
CDY23328	Canola	golgi, plasma membrane	98.68	84.19
KRH11116	Soybean	cytosol	36.67	79.51
VIT_04s0008g00770.t01	Wine grape	plastid	77.88	78.03
Solyc12g095930.1.1	Tomato	plastid	77.69	77.99
Solyc08g065490.2.1	Tomato	nucleus, plastid	76.37	77.1
KRH21130	Soybean	plastid	74.29	73.32
KRH26204	Soybean	cytosol	26.84	71.36
KRH07754	Soybean	cytosol, nucleus, peroxisome	28.17	68.98
KRH11117	Soybean	plastid	27.98	65.2
PGSC0003DMT400002684	Potato	plastid	25.14	63.03
Bra014001.1-P	Field mustard	cytosol	48.96	59.68
Bra032749.1-P	Field mustard	cytosol	51.98	58.39
Bra011796.1-P	Field mustard	mitochondrion	53.5	54.74
Bra010622.1-P	Field mustard	mitochondrion	52.55	53.77
Bra016147.1-P	Field mustard	mitochondrion	52.74	53.35
Bra022129.1-P	Field mustard	cytosol	12.29	45.77
Bra031358.1-P	Field mustard	cytosol	46.31	42.02
Bra016392.1-P	Field mustard	cytosol	45.18	41.35
Bra036774.1-P	Field mustard	cytosol	45.75	41.02
Bra003928.1-P	Field mustard	mitochondrion	52.17	24.8

Protein Annotations

KEGG:00260+2.1.2.1	KEGG:00460+2.1.2.1	KEGG:00630+2.1.2.1	KEGG:00670+2.1.2.1	KEGG:00680+2.1.2.1	MapMan:1.3.5
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EnsemblPlantsGene:Bra040080	EnsemblPlants:Bra040080.1	EnsemblPlants:Bra040080.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004372	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006545	GO:GO:0006730	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016740	GO:GO:0019264
GO:GO:0030170	GO:GO:0035999	InterPro:IPR015421	InterPro:IPR015422	UniProt:M4FG55	HAMAP:MF_00051
PFAM:PF00464	PIRSF:PIRSF000412	ScanProsite:PS00096	PANTHER:PTHR11680	PANTHER:PTHR11680:SF20	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	InterPro:Ser_HO-MeTrfase	InterPro:Ser_HO-MeTrfase_PLP_BS	UniParc:UPI0002546B28

Description

AT4G32520 (E=4e-276) SHM3 | SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); catalytic/ glycine hydroxymethyltransferase/ pyridoxal phosphate binding

Coordinates

chrA08:+:13076035..13078492

Molecular Weight (calculated)

58069.0 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.177

Length

529 amino acids

Sequence
(BLAST)

001: MQACCGGTSM GSLQQPARVQ GPVFAPITSP VTKFSQQLKL NFPRPCPSLF LRKSSVFERR ASSVSAPDVE TTSNEIPFED YSRREVDPEV DDIITKEKNR
101: QFRSLELIAS ENFTSRAVME TVGSCLTNKY SEGLPGKRYY GGNEFIDQLE TLCQNRALAT FRLDSTKWGV NVQPLSGSPA NFAVYTAILK PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTAALF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFKKDP VNGVELESAI NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV ANCRFLANRL VELGFKLVSG
401: GSDNHLVLVD LRPLGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGTPAMTTRG LSEKDFVVVA DLIKEGVEIT MEAKKLVSGT KLGEFTKFVT
501: SPEFPLRERV ESLKDRVESF TSRFPIPGV

Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)

001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV

Arabidopsis Description

SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.