Factsheet for Bra027220.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008840.1-P
Bra009080.1-P
Bra023401.1-P
Bra027974.1-P
Bra033505.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	Bra033505.1-P	AT4G15730.1	21798944
AT3G15660.1	Bra009080.1-P	AT5G09830.1	21798944
AT3G15660.1	Bra008840.1-P	AT5G13280.1	21798944
AT3G15660.1	Bra023401.1-P	AT5G13280.1	21798944
AT3G15660.1	Bra027974.1-P	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97692	Canola	mitochondrion	100.0	100.0
CDY30094	Canola	mitochondrion	88.3	91.52
Bra021125.1-P	Field mustard	mitochondrion	87.72	89.82
AT3G15660.1	Thale cress	mitochondrion	86.55	87.57
VIT_09s0002g06040.t01	Wine grape	mitochondrion	70.76	71.18
KRH47491	Soybean	cytosol, plastid	63.16	67.08
KRH23549	Soybean	mitochondrion	63.16	66.67
KRH44417	Soybean	cytosol, plastid	61.99	65.84
PGSC0003DMT400073383	Potato	mitochondrion	64.91	65.29
Solyc06g067960.2.1	Tomato	plastid	64.91	65.29
Zm00001d008736_P001	Maize	mitochondrion	49.71	50.9
KXG31737	Sorghum	mitochondrion	54.39	50.27
TraesCS3D01G128900.1	Wheat	mitochondrion	52.05	48.11
Os01t0530400-01	Rice	mitochondrion	52.05	48.11
TraesCS3A01G127900.1	Wheat	mitochondrion	52.63	47.62
Os01t0174900-01	Rice	mitochondrion	50.88	47.03
GSMUA_Achr10P...	Banana	mitochondrion	49.71	44.27
EES12336	Sorghum	mitochondrion	47.37	42.63
TraesCS3B01G147100.1	Wheat	mitochondrion	52.05	40.45
Zm00001d025657_P001	Maize	mitochondrion	43.86	38.86
GSMUA_Achr7P08380_001	Banana	plastid	54.97	34.56
HORVU3Hr1G023970.2	Barley	cytosol	52.05	34.36
Bra003199.1-P	Field mustard	plastid	29.24	27.62
Bra007110.1-P	Field mustard	plastid	27.49	27.01
Bra000047.1-P	Field mustard	plastid	30.99	18.03
Bra029532.1-P	Field mustard	cytosol	31.58	15.93
Bra000810.1-P	Field mustard	cytosol	31.58	11.34

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra027220	EnsemblPlants:Bra027220.1	EnsemblPlants:Bra027220.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	UniProt:M4EEK8	InterPro:Monothiol_GRX-rel
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF54	SUPFAM:SSF52833	TIGRFAMs:TIGR00365
InterPro:Thioredoxin-like_sf	UniParc:UPI0001D84235	:	:	:	:

Description

AT3G15660 (E=3e-083) ATGRX4, GRX4 | GRX4 (GLUTAREDOXIN 4); metal ion binding

Coordinates

chrA05:+:19775706..19776795

Molecular Weight (calculated)

18903.5 Da

IEP (calculated)

7.073

GRAVY (calculated)

-0.416

Length

171 amino acids

Sequence
(BLAST)

001: MAAALSSKFL KGITSLHSLR STRLASASVY QHGMMRYSST VPSDSDTHDD FKPTQKVPSG STDSLKDIVE NDVKENPVMI YMKGVPEAPQ CGFSSLAVRV
101: LQQYNVPIGA RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEEK LKDVSGNQKS Q

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.