Factsheet for Bra000810.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008840.1-P
Bra009080.1-P
Bra023401.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04950.1	Bra009080.1-P	AT5G09830.1	21798944
AT4G04950.1	Bra008840.1-P	AT5G13280.1	21798944
AT4G04950.1	Bra023401.1-P	AT5G13280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90882	Canola	cytosol	97.9	97.69
Bra029532.1-P	Field mustard	cytosol	64.71	90.86
CDY21322	Canola	cytosol	96.64	90.55
AT4G32580.1	Thale cress	cytosol	28.99	86.25
AT4G04950.1	Thale cress	cytosol	87.82	85.66
VIT_10s0597g00030.t01	Wine grape	cytosol	73.53	71.14
GSMUA_Achr2P10580_001	Banana	cytosol	68.7	67.84
KRH20463	Soybean	nucleus	69.54	67.55
TraesCS1D01G166900.1	Wheat	cytosol	68.49	66.67
TraesCS1B01G188000.1	Wheat	cytosol	68.07	66.26
Zm00001d006437_P001	Maize	cytosol	43.49	66.13
TraesCS1A01G168900.1	Wheat	cytosol	67.86	66.05
Zm00001d013927_P001	Maize	extracellular	68.49	65.33
Os10t0500700-01	Rice	cytosol	66.6	64.56
KXG38234	Sorghum	cytosol	67.65	64.53
GSMUA_Achr8P11270_001	Banana	cytosol	59.45	64.46
Zm00001d032546_P001	Maize	extracellular	67.23	64.13
Solyc02g078360.2.1	Tomato	cytosol	38.66	62.16
Zm00001d016478_P001	Maize	cytosol	37.18	57.47
Zm00001d011577_P001	Maize	cytosol	49.37	48.06
Zm00001d006222_P001	Maize	cytosol	45.38	43.29
Bra007110.1-P	Field mustard	plastid	12.82	35.06
Bra003199.1-P	Field mustard	plastid	13.24	34.81
Bra021125.1-P	Field mustard	mitochondrion	11.34	32.34
Bra027220.1-P	Field mustard	mitochondrion	11.34	31.58
Bra000047.1-P	Field mustard	plastid	13.66	22.11

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EnsemblPlantsGene:Bra000810	EnsemblPlants:Bra000810.1	EnsemblPlants:Bra000810.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454
GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:IPR013766	UniProt:M4C9D1
InterPro:Monothiol_GRX-rel	PFAM:PF00085	PFAM:PF00462	PFscan:PS51352	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF40	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00025404B7
SEG:seg	:	:	:	:	:

Description

AT4G04950 (E=4e-116) | thioredoxin family protein

Coordinates

chrA03:-:13290232..13292221

Molecular Weight (calculated)

51842.3 Da

IEP (calculated)

4.617

GRAVY (calculated)

-0.322

Length

476 amino acids

Sequence
(BLAST)

001: MGGAVKDIAS KSELDNLRQS GAPVVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVSAVPYFVF FKDGKDVDTL EGADPSSLAN
101: KVGRVAGSST SNEPAAPASL GLAAGPTILE TVKENAKATS KDRAQPLSTT TTTEALNTRL EKLTNSHPVM LFMKGTPEEP RCGFSKNVVN ILKEEEVEFG
201: SFDILSDNEV REGLKKFSNW PTYPQLYSNG ELLGGADIVI AMHESGELKE ALTDEAGKGG GGISSGNAGG LSETLRARLE GLVNSSPVML FMKGKPEEPK
301: CGFSGKVVEI LNQEKIEFAS FDILLDDEVR QGLKVYSNWS SYPQLYVKGE LLGGSDIVLE MQKSGELKQV FSEKGKSLEE RLKSLINSEK VMLFMKGSPD
401: EPKCGFSSKV VKALRDEDVS FGSFDILSDE EVRQGIKSFS NWPTFPQLYY KGELVGGCDI IMELSSSGDL KATLSE

Best Arabidopsis Sequence Match ( AT4G04950.1 )
(BLAST)

001: MSGTVKDIVS KAELDNLRQS GAPVVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVAAVPYFVF FKDGKTVDTL EGADPSSLAN
101: KVGKVAGSST SAEPAAPASL GLAAGPTILE TVKENAKASL QDRAQPVSTA DALKSRLEKL TNSHPVMLFM KGIPEEPRCG FSRKVVDILK EVNVDFGSFD
201: ILSDNEVREG LKKFSNWPTF PQLYCNGELL GGADIAIAMH ESGELKDAFK DLGITTVGSK ESQDEAGKGG GVSSGNTGLS ETLRARLEGL VNSKPVMLFM
301: KGRPEEPKCG FSGKVVEILN QEKIEFGSFD ILLDDEVRQG LKVYSNWSSY PQLYVKGELM GGSDIVLEMQ KSGELKKVLT EKGITGEQSL EDRLKALINS
401: SEVMLFMKGS PDEPKCGFSS KVVKALRGEN VSFGSFDILT DEEVRQGIKN FSNWPTFPQL YYKGELIGGC DIIMELSESG DLKATLSE

Arabidopsis Description

GRXS17Monothiol glutaredoxin-S17 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.