Factsheet for Solyc02g078360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005240.2.1
Solyc11g005360.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04950.1	Solyc11g005360.1.1	AT5G09830.1	21798944
AT4G04950.1	Solyc01g005240.2.1	AT5G13280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G32580.1	Thale cress	cytosol	33.78	62.5
VIT_10s0597g00030.t01	Wine grape	cytosol	72.97	43.9
CDY67888	Canola	cytosol	52.03	43.75
Bra029532.1-P	Field mustard	cytosol	49.66	43.36
KRH20463	Soybean	nucleus	69.59	42.04
CDY16635	Canola	cytosol	43.24	41.69
TraesCS1B01G188000.1	Wheat	cytosol	64.53	39.06
AT4G04950.1	Thale cress	cytosol	64.19	38.93
Bra000810.1-P	Field mustard	cytosol	62.16	38.66
TraesCS1D01G166900.1	Wheat	cytosol	63.85	38.65
TraesCS1A01G168900.1	Wheat	cytosol	63.85	38.65
CDX90882	Canola	cytosol	62.16	38.57
Zm00001d032546_P001	Maize	extracellular	64.86	38.48
KXG38234	Sorghum	cytosol	64.53	38.28
Os10t0500700-01	Rice	cytosol	63.18	38.09
GSMUA_Achr2P10580_001	Banana	cytosol	60.81	37.34
CDY21322	Canola	cytosol	63.85	37.2
Zm00001d013927_P001	Maize	extracellular	62.5	37.07
GSMUA_Achr8P11270_001	Banana	cytosol	51.69	34.85
Zm00001d016478_P001	Maize	cytosol	28.38	27.27
Zm00001d006437_P001	Maize	cytosol	22.3	21.09
Zm00001d011577_P001	Maize	cytosol	31.76	19.22
Zm00001d006222_P001	Maize	cytosol	31.08	18.44
Solyc09g005620.2.1	Tomato	plastid	8.45	8.56
Solyc02g082200.2.1	Tomato	plastid	3.38	5.68
Solyc06g067960.2.1	Tomato	plastid	2.36	4.12

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:IPR013766	UniProt:K4B960	InterPro:Monothiol_GRX-rel	PFAM:PF00085	PFAM:PF00462
PFscan:PS51352	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF40	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc02g078360.2
EnsemblPlants:Solyc02g078360.2.1	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00027680E1	:

Description

No Description!

Coordinates

chr2:-:43074769..43079597

Molecular Weight (calculated)

31559.4 Da

IEP (calculated)

5.219

GRAVY (calculated)

-0.221

Length

296 amino acids

Sequence
(BLAST)

001: MGGGGSVKEV QSKAELDKIV ADGSPAILHF WASWCEASKH MDQVFSHLST DFPHAHFLRV EAEEQPEISE LHSVSAVPYF VFFKEGKAVD TLEGADPSSL
101: ANKVAKIAGS ITPGDPAAPA SLGMAAGPSV LEAIQELSRE NGAPQVSSSG LDDRLTKRLQ QLVSSHPVLL FMKGTPEEPK CGFSQKVVDI LKKEKVKFGS
201: FDILMDSEVR EGLKKFSNWP TYPQLYCKGE LLGGCDIVIT MHESGELTDV FKDHGVGVSD SLETKPNKTA GGKGGISEQS GLSTALTTRL AGESGV

Best Arabidopsis Sequence Match ( AT4G04950.1 )
(BLAST)

001: MSGTVKDIVS KAELDNLRQS GAPVVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVAAVPYFVF FKDGKTVDTL EGADPSSLAN
101: KVGKVAGSST SAEPAAPASL GLAAGPTILE TVKENAKASL QDRAQPVSTA DALKSRLEKL TNSHPVMLFM KGIPEEPRCG FSRKVVDILK EVNVDFGSFD
201: ILSDNEVREG LKKFSNWPTF PQLYCNGELL GGADIAIAMH ESGELKDAFK DLGITTVGSK ESQDEAGKGG GVSSGNTGLS ETLRARLEGL VNSKPVMLFM
301: KGRPEEPKCG FSGKVVEILN QEKIEFGSFD ILLDDEVRQG LKVYSNWSSY PQLYVKGELM GGSDIVLEMQ KSGELKKVLT EKGITGEQSL EDRLKALINS
401: SEVMLFMKGS PDEPKCGFSS KVVKALRGEN VSFGSFDILT DEEVRQGIKN FSNWPTFPQL YYKGELIGGC DIIMELSESG DLKATLSE

Arabidopsis Description

GRXS17Monothiol glutaredoxin-S17 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.