Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67888 | Canola | cytosol | 81.88 | 37.22 |
| Bra029532.1-P | Field mustard | cytosol | 73.12 | 34.51 |
| Solyc02g078360.2.1 | Tomato | cytosol | 62.5 | 33.78 |
| AT4G04950.1 | Thale cress | cytosol | 94.38 | 30.94 |
| Bra000810.1-P | Field mustard | cytosol | 86.25 | 28.99 |
| CDX90882 | Canola | cytosol | 85.62 | 28.72 |
| CDY16635 | Canola | cytosol | 54.38 | 28.34 |
| CDY21322 | Canola | cytosol | 86.25 | 27.17 |
| VIT_10s0597g00030.t01 | Wine grape | cytosol | 71.25 | 23.17 |
| GSMUA_Achr2P10580_001 | Banana | cytosol | 65.0 | 21.58 |
| KRH20463 | Soybean | nucleus | 64.38 | 21.02 |
| Zm00001d032546_P001 | Maize | extracellular | 60.62 | 19.44 |
| Zm00001d013927_P001 | Maize | extracellular | 60.62 | 19.44 |
| TraesCS1D01G166900.1 | Wheat | cytosol | 59.38 | 19.43 |
| TraesCS1B01G188000.1 | Wheat | cytosol | 58.75 | 19.22 |
| TraesCS1A01G168900.1 | Wheat | cytosol | 58.12 | 19.02 |
| Os10t0500700-01 | Rice | cytosol | 58.12 | 18.94 |
| KXG38234 | Sorghum | cytosol | 58.12 | 18.64 |
| GSMUA_Achr8P11270_001 | Banana | cytosol | 48.12 | 17.54 |
| Zm00001d016478_P001 | Maize | cytosol | 12.5 | 6.49 |
| Zm00001d011577_P001 | Maize | cytosol | 17.5 | 5.73 |
| Zm00001d006222_P001 | Maize | cytosol | 15.62 | 5.01 |
| AT3G15660.1 | Thale cress | mitochondrion | 4.38 | 4.14 |
| AT3G54900.1 | Thale cress | plastid | 3.75 | 3.47 |
| AT2G38270.1 | Thale cress | plastid | 6.25 | 3.41 |
| Zm00001d006437_P001 | Maize | cytosol | 3.12 | 1.6 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | EntrezGene:829393 | ProteinID:AEE86082.1 | ArrayExpress:AT4G32580 | EnsemblPlantsGene:AT4G32580 |
| RefSeq:AT4G32580 | TAIR:AT4G32580 | RefSeq:AT4G32580-TAIR-G | EnsemblPlants:AT4G32580.1 | TAIR:AT4G32580.1 | EMBL:AY142534 |
| ProteinID:CAA18603.1 | ProteinID:CAB79975.1 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 | InterPro:Monothiol_GRX-rel | RefSeq:NP_194984.1 | UniProt:O65541 |
| PFAM:PF00085 | PFscan:PS51352 | PANTHER:PTHR10293 | PANTHER:PTHR10293:SF40 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | UniParc:UPI00000AC16B | : | : | : | : |
Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:O65541]
Coordinates
chr4:-:15719637..15720535
Molecular Weight (calculated)
17351.6 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.156
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGTVKDIVS KEELDNLRHS GAPLVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVALVPYFVF FKDGKTVDTL EGADPSSLAN
101: KVGKVAGSIT PASLGLAAGP TILETVKKNA KASGQDRAQP VSTADALKNR LEKLTLLCYS
101: KVGKVAGSIT PASLGLAAGP TILETVKKNA KASGQDRAQP VSTADALKNR LEKLTLLCYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.