CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69652
CDX69884
CDX85659
CDX91135
CDY09781
CDY21608
CDY41709

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G04950.1	CDX69884	AT5G09830.1	21798944
AT4G04950.1	CDY21608	AT5G09830.1	21798944
AT4G04950.1	CDX69652	AT5G13280.1	21798944
AT4G04950.1	CDX85659	AT5G13280.1	21798944
AT4G04950.1	CDX91135	AT5G13280.1	21798944
AT4G04950.1	CDY09781	AT5G13280.1	21798944
AT4G04950.1	CDY41709	AT5G22355.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029532.1-P	Field mustard	cytosol	94.03	97.64
CDY16635	Canola	cytosol	84.38	96.74
AT4G32580.1	Thale cress	cytosol	37.22	81.88
CDX90882	Canola	cytosol	90.62	66.88
AT4G04950.1	Thale cress	cytosol	87.78	63.32
CDY21322	Canola	cytosol	89.49	62.01
VIT_10s0597g00030.t01	Wine grape	cytosol	74.72	53.46
Solyc02g078360.2.1	Tomato	cytosol	43.75	52.03
GSMUA_Achr2P10580_001	Banana	cytosol	69.03	50.41
CDX73434	Canola	cytosol	11.08	50.0
KRH20463	Soybean	nucleus	69.6	50.0
TraesCS1D01G166900.1	Wheat	cytosol	68.75	49.49
TraesCS1B01G188000.1	Wheat	cytosol	68.75	49.49
Os10t0500700-01	Rice	cytosol	68.47	49.08
TraesCS1A01G168900.1	Wheat	cytosol	68.18	49.08
Zm00001d013927_P001	Maize	extracellular	69.03	48.7
KXG38234	Sorghum	cytosol	68.75	48.5
Zm00001d032546_P001	Maize	extracellular	68.18	48.1
GSMUA_Achr8P11270_001	Banana	cytosol	59.38	47.61
Zm00001d006437_P001	Maize	cytosol	36.93	41.53
CDX67614	Canola	plastid	18.47	35.91
CDX78278	Canola	plastid	17.61	35.84
CDY07516	Canola	plastid	18.18	35.36
CDY21857	Canola	mitochondrion	15.34	32.34
CDY20141	Canola	mitochondrion	15.06	31.74
Zm00001d011577_P001	Maize	cytosol	44.03	31.7
Zm00001d016478_P001	Maize	cytosol	27.56	31.49
CDX97692	Canola	mitochondrion	15.06	30.99
CDY30094	Canola	mitochondrion	13.92	29.7
Zm00001d006222_P001	Maize	cytosol	39.49	27.86
CDY07744	Canola	plastid	15.62	18.84
CDY14473	Canola	plastid	15.34	18.75

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078JK47	UniProt:A0A078JK47	EnsemblPlants:CDY67888	ProteinID:CDY67888
ProteinID:CDY67888.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	EnsemblPlantsGene:GSBRNA2T00067627001	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:IPR013766	InterPro:Monothiol_GRX-rel	PFAM:PF00085	PFAM:PF00462	PFscan:PS51352
PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF40	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0004EB7867	:	:	:	:

Description

BnaCnng56820DBnaCnng56820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK47]

Coordinates

chrLK036621:-:1321..3006

Molecular Weight (calculated)

38712.7 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.355

Length

352 amino acids

Sequence
(BLAST)

001: MGGAVKDIAS KSELDNLRQS GAPIALHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVSAVPFFVF FKDGKAVDTL EGADPSSLAN
101: KVGKIAGSST SSEPASLGLA ARPTILETVK ENAKATVKDR AQPAPTTENL NDRLEKFTNS HPVMLFMKGT PEEPRCGFSR QVVGVLREEN VDFGSFDILS
201: DNQVREGLKK FSNWPTFPQL YCNGELLGGS DIVLEMQKSG ELRQVLSEKG KQSLEDRLKT LINSEKVMLF MKGSPDEPKC GFSSKVVKAL RDENVSFGSF
301: DILSDEEVRQ GIKSFSNWPT FPQLYYKGEL VGGCDIIMEL SNSGDLGATL SE

Best Arabidopsis Sequence Match ( AT4G04950.1 )
(BLAST)

001: MSGTVKDIVS KAELDNLRQS GAPVVLHFWA SWCDASKQMD QVFSHLATDF PRAHFFRVEA EEHPEISEAY SVAAVPYFVF FKDGKTVDTL EGADPSSLAN
101: KVGKVAGSST SAEPAAPASL GLAAGPTILE TVKENAKASL QDRAQPVSTA DALKSRLEKL TNSHPVMLFM KGIPEEPRCG FSRKVVDILK EVNVDFGSFD
201: ILSDNEVREG LKKFSNWPTF PQLYCNGELL GGADIAIAMH ESGELKDAFK DLGITTVGSK ESQDEAGKGG GVSSGNTGLS ETLRARLEGL VNSKPVMLFM
301: KGRPEEPKCG FSGKVVEILN QEKIEFGSFD ILLDDEVRQG LKVYSNWSSY PQLYVKGELM GGSDIVLEMQ KSGELKKVLT EKGITGEQSL EDRLKALINS
401: SEVMLFMKGS PDEPKCGFSS KVVKALRGEN VSFGSFDILT DEEVRQGIKN FSNWPTFPQL YYKGELIGGC DIIMELSESG DLKATLSE

Arabidopsis Description

GRXS17Monothiol glutaredoxin-S17 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.