CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69884
CDX73793
CDX77940
CDX77942
CDX77944
CDY21608

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	CDX73793	AT3G50780.1	21798944
AT3G54900.1	CDX77940	AT3G50780.1	21798944
AT3G54900.1	CDX77942	AT3G50780.1	21798944
AT3G54900.1	CDX77944	AT3G50780.1	21798944
AT3G54900.1	CDX69884	AT5G09830.1	21798944
AT3G54900.1	CDY21608	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003199.1-P	Field mustard	plastid	97.24	97.24
CDX73434	Canola	cytosol	40.33	93.59
CDY07516	Canola	plastid	93.37	93.37
CDX78278	Canola	plastid	80.11	83.81
AT3G54900.1	Thale cress	plastid	79.56	83.24
KRH40339	Soybean	cytosol	5.52	58.82
KRH00894	Soybean	plastid	54.14	55.37
KRH40338	Soybean	plastid	48.62	55.35
TraesCS5D01G542400.1	Wheat	plastid	49.17	54.6
Solyc02g082200.2.1	Tomato	plastid	52.49	53.98
TraesCS5B01G545100.1	Wheat	plastid	49.17	53.94
Zm00001d012845_P001	Maize	plastid	50.83	53.49
TraesCS4A01G330300.1	Wheat	plastid	48.07	53.37
PGSC0003DMT400035470	Potato	plastid	51.93	53.11
EER93091	Sorghum	plastid	50.28	52.91
Os03t0851200-01	Rice	nucleus, plastid	48.62	52.38
GSMUA_Achr6P15060_001	Banana	plastid	50.28	52.3
Zm00001d034857_P001	Maize	plastid	49.17	51.74
HORVU5Hr1G122340.1	Barley	plastid	47.51	44.1
CDY21857	Canola	mitochondrion	27.07	29.34
CDX97692	Canola	mitochondrion	27.62	29.24
CDY20141	Canola	mitochondrion	26.52	28.74
CDY30094	Canola	mitochondrion	25.41	27.88
CDY14473	Canola	plastid	33.15	20.83
CDY07744	Canola	plastid	33.15	20.55
CDY16635	Canola	cytosol	34.81	20.52
CDY67888	Canola	cytosol	35.91	18.47
CDX90882	Canola	cytosol	35.91	13.63
CDY21322	Canola	cytosol	35.36	12.6

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078BVA9	EnsemblPlants:CDX67614	ProteinID:CDX67614	ProteinID:CDX67614.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009055
GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:GRX_PICOT-like	EnsemblPlantsGene:GSBRNA2T00098762001
InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF37	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001890D0A	SEG:seg

Description

BnaA07g16540D

Coordinates

chrLK031787:-:1255578..1256400

Molecular Weight (calculated)

19961.2 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.086

Length

181 amino acids

Sequence
(BLAST)

001: MALRSIKTPS VTPTAAVSSS ITNKPQSFRF VSKPSASLAV HNLHQPISIT RSNLLPKLKP ASPPAKFRCS ASAALTPQLR DTLEKLVNSE KVVLFMKGTR
101: DFPMCGFSNT VVQILKNLNV PFEDVNILEN EMLRQGLKEY SNWPTFPQLY IGGEFFGGCD ITLEAFQSGE LQEVVERAIC S

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.