CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69884
CDX73793
CDX77940
CDX77942
CDX77944
CDY21608

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	CDX73793	AT3G50780.1	21798944
AT3G54900.1	CDX77940	AT3G50780.1	21798944
AT3G54900.1	CDX77942	AT3G50780.1	21798944
AT3G54900.1	CDX77944	AT3G50780.1	21798944
AT3G54900.1	CDX69884	AT5G09830.1	21798944
AT3G54900.1	CDY21608	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007110.1-P	Field mustard	plastid	97.11	96.55
CDX73434	Canola	cytosol	41.62	92.31
CDY07516	Canola	plastid	84.39	80.66
CDX67614	Canola	plastid	83.81	80.11
AT3G54900.1	Thale cress	plastid	79.77	79.77
KRH40339	Soybean	cytosol	6.94	70.59
Os03t0851200-01	Rice	nucleus, plastid	54.91	56.55
KRH00894	Soybean	plastid	57.8	56.5
EER93091	Sorghum	plastid	56.07	56.4
Zm00001d034857_P001	Maize	plastid	54.91	55.23
Zm00001d012845_P001	Maize	plastid	54.91	55.23
GSMUA_Achr6P15060_001	Banana	plastid	55.49	55.17
KRH40338	Soybean	plastid	50.29	54.72
TraesCS5D01G542400.1	Wheat	plastid	51.45	54.6
TraesCS5B01G545100.1	Wheat	plastid	51.45	53.94
TraesCS4A01G330300.1	Wheat	plastid	50.29	53.37
Solyc02g082200.2.1	Tomato	plastid	53.76	52.84
PGSC0003DMT400035470	Potato	plastid	53.18	51.98
HORVU5Hr1G122340.1	Barley	plastid	50.29	44.62
CDY21857	Canola	mitochondrion	27.75	28.74
CDX97692	Canola	mitochondrion	28.32	28.66
CDY20141	Canola	mitochondrion	27.17	28.14
CDY30094	Canola	mitochondrion	26.01	27.27
CDY14473	Canola	plastid	34.1	20.49
CDY07744	Canola	plastid	34.1	20.21
CDY16635	Canola	cytosol	35.84	20.2
CDY67888	Canola	cytosol	35.84	17.61
CDX90882	Canola	cytosol	35.26	12.79
CDY21322	Canola	cytosol	34.68	11.81

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078CT07	EnsemblPlants:CDX78278	ProteinID:CDX78278	ProteinID:CDX78278.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725	GO:GO:0045454	InterPro:GRX_PICOT-like
EnsemblPlantsGene:GSBRNA2T00129621001	InterPro:Glutaredoxin	InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF37	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EDFAFE

Description

BnaA09g34730D

Coordinates

chrLK031814:-:2155262..2156279

Molecular Weight (calculated)

18938.9 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.066

Length

173 amino acids

Sequence
(BLAST)

001: MALRSVKAPT SIPPGLIVSS SVINKPQSLR FASKPTASLA VRSNLKLKPA SPRAAKFRCS ASSSSALTPQ LRDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKSL NVPFEDVNIL ENEMVRQGLK EYSSWPTFPQ LYIDGEFFGG CDITLEAFQS GELQEAVEKA MCS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.