CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69884
CDX73793
CDX77940
CDX77942
CDX77944
CDY21608

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	CDX73793	AT3G50780.1	21798944
AT3G54900.1	CDX77940	AT3G50780.1	21798944
AT3G54900.1	CDX77942	AT3G50780.1	21798944
AT3G54900.1	CDX77944	AT3G50780.1	21798944
AT3G54900.1	CDX69884	AT5G09830.1	21798944
AT3G54900.1	CDY21608	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73434	Canola	cytosol	40.33	93.59
CDX67614	Canola	plastid	93.37	93.37
Bra003199.1-P	Field mustard	plastid	92.82	92.82
AT3G54900.1	Thale cress	plastid	81.22	84.97
CDX78278	Canola	plastid	80.66	84.39
KRH40339	Soybean	cytosol	5.52	58.82
KRH00894	Soybean	plastid	54.14	55.37
KRH40338	Soybean	plastid	48.62	55.35
Solyc02g082200.2.1	Tomato	plastid	52.49	53.98
TraesCS5D01G542400.1	Wheat	plastid	48.07	53.37
PGSC0003DMT400035470	Potato	plastid	51.93	53.11
TraesCS5B01G545100.1	Wheat	plastid	48.07	52.73
Os03t0851200-01	Rice	nucleus, plastid	48.62	52.38
Zm00001d012845_P001	Maize	plastid	49.72	52.33
TraesCS4A01G330300.1	Wheat	plastid	46.96	52.15
EER93091	Sorghum	plastid	49.17	51.74
GSMUA_Achr6P15060_001	Banana	plastid	49.72	51.72
Zm00001d034857_P001	Maize	plastid	48.07	50.58
HORVU5Hr1G122340.1	Barley	plastid	46.96	43.59
CDY21857	Canola	mitochondrion	27.62	29.94
CDX97692	Canola	mitochondrion	28.18	29.82
CDY20141	Canola	mitochondrion	27.07	29.34
CDY30094	Canola	mitochondrion	25.97	28.48
CDY16635	Canola	cytosol	35.36	20.85
CDY14473	Canola	plastid	32.6	20.49
CDY07744	Canola	plastid	32.6	20.21
CDY67888	Canola	cytosol	35.36	18.18
CDX90882	Canola	cytosol	35.36	13.42
CDY21322	Canola	cytosol	34.81	12.4

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078F2D4	UniProt:A0A078F2D4	EnsemblPlants:CDY07516	ProteinID:CDY07516
ProteinID:CDY07516.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	EnsemblPlantsGene:GSBRNA2T00124553001	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF37
SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001BA6EC7	:	:

Description

BnaC06g15480DBnaC06g15480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2D4]

Coordinates

chrLK031979:+:239745..240667

Molecular Weight (calculated)

20049.4 Da

IEP (calculated)

8.976

GRAVY (calculated)

0.012

Length

181 amino acids

Sequence
(BLAST)

001: MALRSVKTPP FVTPTAVVSS SIINKPQSFR FVSKPSASLA VHNLHQPISI IRSNLIPKLK PASSAAKFRC SASALTPQLR DTLEKLVNSE KVVLFMKGTR
101: DFPMCGFSNT VVQILKNLNV PFEDVNILEN EMLRQGLKEY SNWPTFPQLY IGGEFFGGCD ITLEAFQSGE LQEVVERAIC S

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.