Factsheet for TraesCS4A01G330300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G378100.1
TraesCS3A01G378200.1
TraesCS3B01G410900.1
TraesCS3D01G371400.1
TraesCS3D01G371500.1
TraesCS5A01G060900.1
TraesCS5A01G404600.1
TraesCS5B01G071200.2
TraesCS5B01G409500.1
TraesCS5D01G072400.2
TraesCS5D01G414700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54900.1	TraesCS5A01G060900.1	AT3G50780.1	21798944
AT3G54900.1	TraesCS5A01G404600.1	AT3G50780.1	21798944
AT3G54900.1	TraesCS5B01G071200.2	AT3G50780.1	21798944
AT3G54900.1	TraesCS5B01G409500.1	AT3G50780.1	21798944
AT3G54900.1	TraesCS5D01G072400.2	AT3G50780.1	21798944
AT3G54900.1	TraesCS5D01G414700.1	AT3G50780.1	21798944
AT3G54900.1	TraesCS3A01G378100.1	AT5G09830.1	21798944
AT3G54900.1	TraesCS3A01G378200.1	AT5G09830.1	21798944
AT3G54900.1	TraesCS3B01G410900.1	AT5G09830.1	21798944
AT3G54900.1	TraesCS3D01G371400.1	AT5G09830.1	21798944
AT3G54900.1	TraesCS3D01G371500.1	AT5G09830.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G542400.1	Wheat	plastid	98.16	98.16
TraesCS5B01G545100.1	Wheat	plastid	95.09	93.94
HORVU5Hr1G122340.1	Barley	plastid	92.64	77.44
KRH40339	Soybean	cytosol	7.98	76.47
CDX73434	Canola	cytosol	34.97	73.08
Os03t0851200-01	Rice	nucleus, plastid	74.23	72.02
EER93091	Sorghum	plastid	75.46	71.51
Zm00001d034857_P001	Maize	plastid	74.85	70.93
Zm00001d012845_P001	Maize	plastid	74.85	70.93
GSMUA_Achr6P15060_001	Banana	plastid	59.51	55.75
Solyc02g082200.2.1	Tomato	plastid	55.21	51.14
CDX78278	Canola	plastid	53.37	50.29
PGSC0003DMT400035470	Potato	plastid	54.6	50.28
AT3G54900.1	Thale cress	plastid	52.76	49.71
Bra007110.1-P	Field mustard	plastid	51.53	48.28
Bra003199.1-P	Field mustard	plastid	53.37	48.07
CDX67614	Canola	plastid	53.37	48.07
KRH00894	Soybean	plastid	52.15	48.02
CDY07516	Canola	plastid	52.15	46.96
KRH40338	Soybean	plastid	44.17	45.28
TraesCS3A01G127900.1	Wheat	mitochondrion	25.77	22.22
TraesCS5A01G154700.1	Wheat	mitochondrion	37.42	15.68
TraesCS1A01G168900.1	Wheat	cytosol	34.97	11.66

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987
GO:GO:0015035	GO:GO:0015297	GO:GO:0019725	GO:GO:0045454	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF37
SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS4A01G330300	EnsemblPlants:TraesCS4A01G330300.1	TIGR:cd03028
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:615205524..615209815

Molecular Weight (calculated)

17469.2 Da

IEP (calculated)

8.055

GRAVY (calculated)

0.014

Length

163 amino acids

Sequence
(BLAST)

001: MAAAAPSATA LAGAALPLPL SARPQPARFS VALPRTAPPP PALRLRSVRR LAAAEGPPAG MKETLDKVVS AHKVVLFMKG TKDFPQCGFS HTVVQILRSL
101: DVPFETLDVL ANDALRQGLK DYSSWPTFPQ LYIDGEFFGG CDITLEAYKS GELQETLEKA MCS

Best Arabidopsis Sequence Match ( AT3G54900.1 )
(BLAST)

001: MALRSVKTPT LITSVAVVSS SVTNKPHSIR FSLKPTSALV VHNHQLSFYG SNLKLKPTKF RCSASALTPQ LKDTLEKLVN SEKVVLFMKG TRDFPMCGFS
101: NTVVQILKNL NVPFEDVNIL ENEMLRQGLK EYSNWPTFPQ LYIGGEFFGG CDITLEAFKT GELQEEVEKA MCS

Arabidopsis Description

GRXS14Monothiol glutaredoxin-S14, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84Y95]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.