Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G168900.1 | cytosol, nucleus |
| TraesCS1B01G188000.1 | cytosol, nucleus |
| TraesCS1D01G166900.1 | cytosol, nucleus |
| TraesCS3A01G127900.1 | |
| TraesCS3B01G147100.1 | |
| TraesCS3D01G128900.1 | |
| TraesCS4A01G330300.1 | |
| TraesCS5A01G154700.1 | |
| TraesCS5B01G152900.1 | |
| TraesCS5B01G545100.1 | |
| TraesCS5D01G159600.1 | |
| TraesCS5D01G542400.1 | |
| TraesCS7A01G293400.1 | |
| TraesCS7B01G185700.1 | |
| TraesCS7D01G289300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G378200.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS3D01G371400.1 | Wheat | cytosol | 6.12 | 6.45 |
| GSMUA_Achr6P19570_001 | Banana | cytosol | 5.1 | 5.62 |
| EES03940 | Sorghum | cytosol | 5.1 | 5.38 |
| Zm00001d042726_P001 | Maize | cytosol | 5.1 | 5.26 |
| CDY21608 | Canola | cytosol | 4.08 | 4.35 |
| CDX69884 | Canola | cytosol, nucleus, plastid | 4.08 | 4.35 |
| Bra009080.1-P | Field mustard | nucleus | 4.08 | 4.35 |
| KRH43388 | Soybean | cytosol, nucleus, plastid | 4.08 | 4.3 |
| KRH59529 | Soybean | cytosol | 4.08 | 4.3 |
| AT5G09830.1 | Thale cress | cytosol | 4.08 | 4.3 |
| Solyc11g005360.1.1 | Tomato | cytosol | 3.06 | 3.26 |
| VIT_04s0044g00520.t01 | Wine grape | nucleus | 3.06 | 3.23 |
| CDY18699 | Canola | cytosol | 3.06 | 3.06 |
| CDX81243 | Canola | cytosol | 3.06 | 3.06 |
| Bra037789.1-P | Field mustard | cytosol | 3.06 | 3.06 |
| Os01t0866600-01 | Rice | cytosol, extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G371500.1 | EnsemblPlantsGene:TraesCS3D01G371500 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm3 | ncoils:Coil | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF6 | PFAM:PF01423 | SMART:SM00651 |
| SUPFAM:SSF50182 | TIGR:cd01730 | MapMan:16.4.3.3 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:484809697..484811309
Molecular Weight (calculated)
11280.6 Da
IEP (calculated)
4.504
GRAVY (calculated)
-0.182
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MASADEEIAV KEPLDLIRLS LDERIYVKLR SDRELRGKLH AYDQHLNMIL GDVEEIVTTV EIDDETYEEI VRTTRRTIPF LFVRGDGVIL VSPPLRTA
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Arabidopsis Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.