Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
plastid: 18419817 plastid: 22160430 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G289300.1 | Wheat | plastid | 98.82 | 98.82 |
| TraesCS7A01G293400.1 | Wheat | plastid | 98.82 | 98.82 |
| OQU80669 | Sorghum | mitochondrion, plastid | 71.76 | 79.22 |
| Zm00001d031856_P002 | Maize | plastid | 77.65 | 79.04 |
| GSMUA_Achr1P11150_001 | Banana | cytosol, plastid | 54.12 | 74.8 |
| Zm00001d049886_P001 | Maize | plastid | 77.65 | 74.16 |
| KRH32275 | Soybean | plastid | 52.35 | 53.61 |
| KRH19662 | Soybean | plastid | 51.76 | 53.01 |
| AT4G28730.1 | Thale cress | plastid | 53.53 | 52.3 |
| CDX92892 | Canola | plastid | 54.12 | 51.69 |
| VIT_07s0005g04860.t01 | Wine grape | plastid | 54.12 | 51.69 |
| CDY50922 | Canola | plastid | 54.71 | 51.67 |
| CDY06875 | Canola | plastid | 52.35 | 50.86 |
| CDX97456 | Canola | plastid | 54.12 | 50.83 |
| KRH55649 | Soybean | plastid | 48.82 | 50.61 |
| CDY68269 | Canola | plastid | 52.94 | 50.28 |
| Bra010351.1-P | Field mustard | plastid | 52.94 | 50.28 |
| Bra024183.1-P | Field mustard | plastid | 49.41 | 50.0 |
| Solyc06g083690.2.1 | Tomato | plastid | 53.53 | 49.73 |
| CDY35215 | Canola | plastid | 49.41 | 48.55 |
| Bra011056.1-P | Field mustard | plastid | 49.41 | 48.55 |
| CDY31980 | Canola | plastid | 46.47 | 45.66 |
| CDY05731 | Canola | plastid | 46.47 | 45.4 |
| Bra036458.1-P | Field mustard | plastid | 41.76 | 42.52 |
| Os08t0565800-01 | Rice | cytosol | 43.53 | 42.29 |
| HORVU7Hr1G064050.1 | Barley | mitochondrion | 42.35 | 42.11 |
| TraesCS7B01G404000.1 | Wheat | mitochondrion, plastid | 31.18 | 39.26 |
| AT2G20270.2 | Thale cress | plastid | 44.71 | 36.89 |
| TraesCS2B01G381600.1 | Wheat | plastid | 27.65 | 35.88 |
| PGSC0003DMT400051717 | Potato | plastid | 53.53 | 34.6 |
| TraesCS6B01G285100.1 | Wheat | endoplasmic reticulum, extracellular | 24.71 | 33.33 |
Protein Annotations
| MapMan:18.8.2 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 | InterPro:Glutaredoxin | InterPro:Glutaredoxin_euk/vir |
| InterPro:Glutaredoxin_subgr | InterPro:IPR002109 | PFAM:PF00462 | PRINTS:PR00160 | PFscan:PS51354 | PANTHER:PTHR10168 |
| PANTHER:PTHR10168:SF14 | SUPFAM:SSF52833 | TIGRFAMs:TIGR02180 | InterPro:Thioredoxin-like_sf | EnsemblPlantsGene:TraesCS7B01G185700 | EnsemblPlants:TraesCS7B01G185700.1 |
| TIGR:cd03419 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:304102472..304125439
Molecular Weight (calculated)
18579.5 Da
IEP (calculated)
9.332
GRAVY (calculated)
-0.259
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPCPTLCR LPATNLGLPW CPRSIPFPRL ALAARRARAV AARASSSSSS PDSSFGSRME DSVKKTLADN PVVIYSKSWC SYSMEVKGLF KRIGVDPHVI
101: ELDQLGAQGP QLQKVLERLT GQSTVPNVFI GGKHIGGCTD TVKLYRKGEL ATMLTELDIK VNHHDKIEHD
101: ELDQLGAQGP QLQKVLERLT GQSTVPNVFI GGKHIGGCTD TVKLYRKGEL ATMLTELDIK VNHHDKIEHD
001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS
Arabidopsis Description
GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.