CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	CDY24170	AT3G47620.1	21798944
AT4G28730.1	CDY36943	AT3G47620.1	21798944
AT4G28730.1	CDX89437	AT4G25200.1	21798944
AT4G28730.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35215	Canola	plastid	94.29	95.38
CDX92892	Canola	plastid	82.29	80.9
CDY50922	Canola	plastid	82.86	80.56
AT4G28730.1	Thale cress	plastid	77.14	77.59
CDY68269	Canola	plastid	77.71	75.98
CDX97456	Canola	plastid	78.29	75.69
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	46.29	65.85
KRH32275	Soybean	plastid	54.29	57.23
HORVU7Hr1G064020.2	Barley	extracellular	26.29	56.79
KRH55649	Soybean	plastid	50.86	54.27
CDY05731	Canola	plastid	53.14	53.45
VIT_07s0005g04860.t01	Wine grape	plastid	54.29	53.37
CDY31980	Canola	plastid	52.57	53.18
KRH19662	Soybean	plastid	50.29	53.01
Zm00001d031856_P002	Maize	plastid	50.29	52.69
TraesCS7D01G289300.1	Wheat	plastid	50.86	52.35
TraesCS7A01G293400.1	Wheat	plastid	50.86	52.35
TraesCS7B01G185700.1	Wheat	plastid	50.86	52.35
OQU80669	Sorghum	mitochondrion, plastid	45.71	51.95
Solyc06g083690.2.1	Tomato	plastid	53.14	50.82
CDY36849	Canola	cytosol	31.43	49.55
CDY44566	Canola	cytosol	31.43	49.55
Zm00001d049886_P001	Maize	plastid	50.29	49.44
CDY16750	Canola	cytosol	29.14	43.97
CDX87275	Canola	cytosol	28.57	43.1
CDY00348	Canola	cytosol	29.14	42.5
CDX84377	Canola	cytosol	29.14	42.5
CDX87276	Canola	cytosol	29.71	41.6
CDY16749	Canola	cytosol	29.14	40.8
CDX92459	Canola	endoplasmic reticulum, golgi	28.57	38.46
CDY16539	Canola	endoplasmic reticulum	28.57	37.88
PGSC0003DMT400051717	Potato	plastid	52.57	34.98
CDX81399	Canola	extracellular, plasma membrane	25.71	33.09
CDY18599	Canola	extracellular, vacuole	25.14	32.84
Os08t0565800-01	Rice	cytosol	32.57	32.57
CDY15928	Canola	cytosol	28.57	32.05
CDX99634	Canola	cytosol	28.57	32.05
HORVU7Hr1G064050.1	Barley	mitochondrion	26.86	27.49
CDY45086	Canola	endoplasmic reticulum	28.57	27.17

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078EXQ3	EnsemblPlants:CDY06875	ProteinID:CDY06875	ProteinID:CDY06875.1
InterPro:GLR_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00123160001	InterPro:Glutaredoxin	InterPro:Glutaredoxin_euk/vir
InterPro:Glutaredoxin_subgr	InterPro:IPR002109	PFAM:PF00462	PRINTS:PR00160	ScanProsite:PS00194	ScanProsite:PS00195
PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	TIGRFAMs:TIGR02180	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	UniParc:UPI0004EEEA17	SEG:seg	:	:	:

Description

BnaC01g09740D

Coordinates

chrLK031973:-:959755..961313

Molecular Weight (calculated)

18720.4 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.115

Length

175 amino acids

Sequence
(BLAST)

001: MAVTAFNPLK LASSPRDSFP SISSSTSYSV SLISFGIRNS VGSPLKRCLK QTCSVRAMSS SSSSSFGSGM EESVKKTVAD NTVVVYSKTW CPYCSEVKTL
101: FKRLGVQPLV VELDELGPQG TQLQSVLETL TGQRTVPNVF VGGKHIGGCT DTVNLNRKGE LELMLAEANA KTDQT

Best Arabidopsis Sequence Match ( AT2G20270.1 )
(BLAST)

001: MVAATVNLAN MTWTSLNSNP AISFSMLSGI RNLGMLPFRR CLKPTVIGIA SWPPLRCSSV KAMSSSSSSS GSTLEETVKT TVAENPVVVY SKTWCSYSSQ
101: VKSLFKSLQV EPLVVELDQL GSEGSQLQNV LEKITGQYTV PNVFIGGKHI GGCSDTLQLH NKGELEAILA EANGKNGQT

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.