CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	CDY24170	AT3G47620.1	21798944
AT4G28730.1	CDY36943	AT3G47620.1	21798944
AT4G28730.1	CDX89437	AT4G25200.1	21798944
AT4G28730.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011056.1-P	Field mustard	plastid	100.0	100.0
CDY06875	Canola	plastid	95.38	94.29
CDX92892	Canola	plastid	81.5	79.21
CDY50922	Canola	plastid	81.5	78.33
AT4G28730.1	Thale cress	plastid	75.72	75.29
CDY68269	Canola	plastid	77.46	74.86
CDX97456	Canola	plastid	78.03	74.59
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	45.09	63.41
HORVU7Hr1G064020.2	Barley	extracellular	26.59	56.79
KRH32275	Soybean	plastid	53.18	55.42
KRH55649	Soybean	plastid	50.87	53.66
VIT_07s0005g04860.t01	Wine grape	plastid	54.34	52.81
Zm00001d031856_P002	Maize	plastid	50.29	52.1
CDY05731	Canola	plastid	52.02	51.72
CDY31980	Canola	plastid	51.45	51.45
KRH19662	Soybean	plastid	49.13	51.2
OQU80669	Sorghum	mitochondrion, plastid	44.51	50.0
Solyc06g083690.2.1	Tomato	plastid	52.6	49.73
TraesCS7D01G289300.1	Wheat	plastid	48.55	49.41
TraesCS7A01G293400.1	Wheat	plastid	48.55	49.41
TraesCS7B01G185700.1	Wheat	plastid	48.55	49.41
Zm00001d049886_P001	Maize	plastid	49.13	47.75
CDY44566	Canola	cytosol	30.06	46.85
CDY36849	Canola	cytosol	30.06	46.85
CDX87275	Canola	cytosol	28.32	42.24
CDY16750	Canola	cytosol	27.75	41.38
CDX84377	Canola	cytosol	27.75	40.0
CDY00348	Canola	cytosol	27.75	40.0
CDX87276	Canola	cytosol	28.32	39.2
CDY16749	Canola	cytosol	27.75	38.4
CDX92459	Canola	endoplasmic reticulum, golgi	28.32	37.69
CDY16539	Canola	endoplasmic reticulum	28.32	37.12
PGSC0003DMT400051717	Potato	plastid	52.02	34.22
Os08t0565800-01	Rice	cytosol	32.95	32.57
CDX81399	Canola	extracellular, plasma membrane	25.43	32.35
CDY18599	Canola	extracellular, vacuole	24.86	32.09
CDX99634	Canola	cytosol	27.75	30.77
CDY15928	Canola	cytosol	27.75	30.77
CDY45086	Canola	endoplasmic reticulum	28.32	26.63
HORVU7Hr1G064050.1	Barley	mitochondrion	26.01	26.32

Protein Annotations

MapMan:18.8.2	Gene3D:3.40.30.10	GO:A0A078H9U0	UniProt:A0A078H9U0	EnsemblPlants:CDY35215	ProteinID:CDY35215
ProteinID:CDY35215.1	InterPro:GLR_AS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00058124001	InterPro:Glutaredoxin
InterPro:Glutaredoxin_euk/vir	InterPro:Glutaredoxin_subgr	InterPro:IPR002109	PFAM:PF00462	PRINTS:PR00160	ScanProsite:PS00194
ScanProsite:PS00195	PFscan:PS51354	PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	TIGRFAMs:TIGR02180
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_CS	UniParc:UPI00025458E9	SEG:seg	:	:

Description

BnaA01g08160DBnaA01g08160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9U0]

Coordinates

chrLK032348:+:178076..179589

Molecular Weight (calculated)

18744.6 Da

IEP (calculated)

9.018

GRAVY (calculated)

-0.162

Length

173 amino acids

Sequence
(BLAST)

001: MAVTAFNPLK LASSPRDSFP SISSSTSYSV SLISFVRIRN SVGSPLKKCL KQTCSVRAMS SSSFESGMEE SVKKTVNDNT VVVYSKTWCP YCSEVKTLFK
101: RLGVQPLVVE LDELGPQGTQ LQKVLETLTG QRTVPSVFVG GKHIGGCTDT VNLNRKGELE LMLAEANGKT DQT

Best Arabidopsis Sequence Match ( AT4G28730.1 )
(BLAST)

001: MAVTAFNTLK LVSSSLDPIP SVSCSSYSFS LIYVGSPYKR CLKQSCSVRA MTSSSSAASS SSSSFGSRME ESIRKTVTEN TVVIYSKTWC SYCTEVKTLF
101: KRLGVQPLVV ELDQLGPQGP QLQKVLERLT GQHTVPNVFV CGKHIGGCTD TVKLNRKGDL ELMLAEANGK NGQS

Arabidopsis Description

GRXC5GrxC5 [Source:UniProtKB/TrEMBL;Acc:A0A178UXL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.