Factsheet for PGSC0003DMT400051717

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400012249

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28730.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT4G28730.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083690.2.1	Tomato	plastid	66.92	96.17
GSMUA_Achr1P11150_001	Banana	cytosol, plastid	32.7	69.92
KRH32275	Soybean	plastid	39.16	62.05
VIT_07s0005g04860.t01	Wine grape	plastid	41.44	61.24
KRH19662	Soybean	plastid	37.26	59.04
HORVU7Hr1G064020.2	Barley	extracellular	17.87	58.02
Zm00001d031856_P002	Maize	plastid	36.12	56.89
CDX92892	Canola	plastid	38.02	56.18
OQU80669	Sorghum	mitochondrion, plastid	32.7	55.84
CDY50922	Canola	plastid	38.02	55.56
KRH55649	Soybean	plastid	34.6	55.49
AT4G28730.1	Thale cress	plastid	36.5	55.17
Bra024183.1-P	Field mustard	plastid	34.98	54.76
CDY68269	Canola	plastid	37.26	54.75
Bra010351.1-P	Field mustard	plastid	37.26	54.75
CDX97456	Canola	plastid	37.26	54.14
TraesCS7B01G185700.1	Wheat	plastid	34.6	53.53
TraesCS7D01G289300.1	Wheat	plastid	34.22	52.94
TraesCS7A01G293400.1	Wheat	plastid	34.22	52.94
Zm00001d049886_P001	Maize	plastid	35.74	52.81
CDY06875	Canola	plastid	34.98	52.57
Bra011056.1-P	Field mustard	plastid	34.22	52.02
CDY35215	Canola	plastid	34.22	52.02
CDY05731	Canola	plastid	32.7	49.43
CDY31980	Canola	plastid	32.32	49.13
Bra036458.1-P	Field mustard	plastid	30.04	47.31
PGSC0003DMT400001269	Potato	cytosol	18.25	44.44
AT2G20270.2	Thale cress	plastid	33.84	43.2
PGSC0003DMT400049116	Potato	cytosol	17.49	42.59
Os08t0565800-01	Rice	cytosol	24.33	36.57
PGSC0003DMT400046764	Potato	plastid	16.73	35.2
PGSC0003DMT400020793	Potato	endoplasmic reticulum, extracellular	17.11	31.47
HORVU7Hr1G064050.1	Barley	mitochondrion	18.63	28.66
PGSC0003DMT400009308	Potato	mitochondrion	18.25	21.33

Protein Annotations

EntrezGene:102580199	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035
GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:Glutaredoxin	InterPro:IPR002109
UniProt:M1BS38	PFAM:PF00462	EnsemblPlantsGene:PGSC0003DMG400020080	PGSC:PGSC0003DMG400020080	EnsemblPlants:PGSC0003DMT400051717	PFscan:PS51354
PANTHER:PTHR10168	PANTHER:PTHR10168:SF14	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0002957919	:

Description

Glutaredoxin S12 [Source:PGSC_GENE;Acc:PGSC0003DMG400020080]

Coordinates

chr6:-:58568755..58573175

Molecular Weight (calculated)

29496.6 Da

IEP (calculated)

9.973

GRAVY (calculated)

-0.413

Length

263 amino acids

Sequence
(BLAST)

001: MAATSSLTKN LSTFSIPQSF HPQNGTQIVR HLQRIPNSNC SVQSVRLHRF GSRIENNGPR KIGRVQIRAM SGSFGSRLEE SVKKTITENP VVVYSKSWCS
101: YSTEVKVLFK RLGVDPLVIE LDEMGLNLRI SAKTGAYCGE RSKRDFFDQN YHQTKRKRSE IVLFLVMLVN HECMLAFEYS STTTVTDFPK EEGKQMLKGD
201: LIDLGPQGPQ LQKVLERLTG QHTVPNVFIG AKHIGGCTDT IKLYRKGELE SLLSEAKAGK TES

Best Arabidopsis Sequence Match ( AT2G20270.2 )
(BLAST)

001: MVAATVNLAN MTWTSLNSNP AISFSMLSGI RNLGMLPFRR CLKPTVIGIA SWPPLRCSSV KAMSSSSSSS GSTLEETVKT TVAENPVVVY SKTWCSYSSQ
101: VKSLFKSLQV EPLVVELDQL VSLGKTSLPH DIGLKHLQKF WWFLAFPGSE GSQLQNVLEK ITGQYTVPNV FIGGKHIGGC SDTLQLHNKG ELEAILAEAN
201: GKNGQT

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IUG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.